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github.com/EarlhamInst/KAT
/ functions
Functions
22,481 in github.com/EarlhamInst/KAT
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Functions
22,481
◇
Types & classes
25,829
↓ 6 callers
Method
Reset
tests/gtest/src/gtest-all.cc:1382
↓ 6 callers
Method
Reset
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:1382
↓ 6 callers
Function
SEQAN_ASSERT_GT_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2562
↓ 6 callers
Function
SWIG_AsCharPtrAndSize
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:1912
↓ 6 callers
Function
SWIG_From_unsigned_SS_long
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:2014
↓ 6 callers
Function
SWIG_Perl_TypeProxyName
deps/jellyfish-2.2.0/swig/perl5/swig_wrap.cpp:1070
↓ 6 callers
Function
SWIG_Python_str_AsChar
Warning: This function will allocate a new string in Python 3, * so please call SWIG_Python_str_DelForPy3(x) to free the space. */
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:783
↓ 6 callers
Function
SkipPrefix
If *pstr starts with the given prefix, modifies *pstr to be right past the prefix and returns true; otherwise leaves *pstr unchanged and returns false
tests/gtest/src/gtest-all.cc:6147
↓ 6 callers
Function
SkipPrefix
If *pstr starts with the given prefix, modifies *pstr to be right past the prefix and returns true; otherwise leaves *pstr unchanged and returns false
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:6147
↓ 6 callers
Function
SystemTimeToFileTime
deps/boost/boost/winapi/time.hpp:100
↓ 6 callers
Function
_adjustParent
deps/seqan-library-2.0.0/include/seqan/store/store_io_gff.h:168
↓ 6 callers
Function
_assignArgumentValue
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:851
↓ 6 callers
Function
_computeAlignmentHelperCheckTerminate
deps/seqan-library-2.0.0/include/seqan/align/dp_algorithm_impl.h:428
↓ 6 callers
Function
_copyValidValuesToFileExt
deps/seqan-library-2.0.0/include/seqan/arg_parse/argument_parser.h:282
↓ 6 callers
Function
_equalRangeSA
deps/seqan-library-2.0.0/include/seqan/index/find_index_esa.h:780
↓ 6 callers
Function
_findBeginInit
deps/seqan-library-2.0.0/include/seqan/find/find_begin.h:322
↓ 6 callers
Function
_initialize
deps/seqan-library-2.0.0/include/seqan/file/file_mapping.h:241
↓ 6 callers
Function
_isLeaf
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2787
↓ 6 callers
Function
_mapFileFormatToCompressionFormat
deps/seqan-library-2.0.0/include/seqan/stream/formatted_file.h:550
↓ 6 callers
Function
_ord
deps/seqan-library-2.0.0/include/seqan/translation/translation.h:126
↓ 6 callers
Function
_parent
deps/seqan-library-2.0.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:146
↓ 6 callers
Function
_printProfile
deps/seqan-library-2.0.0/include/seqan/realign/realign_helper_functions.h:135
↓ 6 callers
Function
_setCapacity
deps/seqan-library-2.0.0/include/seqan/sequence/string_alloc.h:342
↓ 6 callers
Function
_setEnd
deps/seqan-library-2.0.0/include/seqan/sequence/string_cstyle.h:361
↓ 6 callers
Function
_skipsumlistFind
deps/seqan-library-2.0.0/include/seqan/map/sumlist_skip.h:222
↓ 6 callers
Function
_swiftMultiProcessQGram
deps/seqan-library-2.0.0/include/seqan/index/find_swift.h:1045
↓ 6 callers
Function
_tryCast
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_type_support.h:51
↓ 6 callers
Function
addOption
deps/seqan-library-2.0.0/include/seqan/arg_parse/argument_parser.h:298
↓ 6 callers
Method
add_messages_path
deps/boost/libs/locale/src/shared/generator.cpp:99
↓ 6 callers
Function
appendRead
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:1043
↓ 6 callers
Method
array
deps/jellyfish-2.2.0/include/jellyfish/large_hash_array.hpp:942
↓ 6 callers
Function
arrayConstructCopy
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1105
↓ 6 callers
Method
asLargestUInt
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2358
↓ 6 callers
Method
as_special
Returns either special value type or is_not_special
deps/boost/boost/date_time/int_adapter.hpp:193
↓ 6 callers
Method
assert_lock_upgraded
deps/boost/boost/thread/pthread/shared_mutex.hpp:64
↓ 6 callers
Function
assign
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:629
↓ 6 callers
Function
assign
deps/seqan-library-2.0.0/include/seqan/index/index_device.h:314
↓ 6 callers
Method
assign
deps/boost/boost/fusion/container/map/detail/map_impl.hpp:195
↓ 6 callers
Method
assign
deps/boost/boost/test/utils/iterator/token_iterator.hpp:135
↓ 6 callers
Function
assignInfix
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled.h:726
↓ 6 callers
Function
atEnd
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h:534
↓ 6 callers
Function
atomicInc
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_atomic_primitives.h:296
↓ 6 callers
Method
base
deps/boost/boost/move/detail/reverse_iterator.hpp:71
↓ 6 callers
Function
basename
deps/boost/boost/filesystem/convenience.hpp:39
↓ 6 callers
Function
begin
deps/seqan-library-2.0.0/include/seqan/sequence/segment_prefix.h:189
↓ 6 callers
Function
begin
deps/seqan-library-2.0.0/include/seqan/sequence/segment_infix.h:212
↓ 6 callers
Method
begin
deps/jellyfish-2.2.0/include/jellyfish/cpp_array.hpp:134
↓ 6 callers
Function
boyer_moore_horspool_search
deps/boost/boost/algorithm/searching/boyer_moore_horspool.hpp:147
↓ 6 callers
Method
buffer
Returns the pointer and size of the internal buffer. Does not throw.
deps/boost/boost/interprocess/streams/bufferstream.hpp:96
↓ 6 callers
Function
calculatePeriodicity
deps/seqan-library-2.0.0/include/seqan/alignment_free/kmer_functions.h:711
↓ 6 callers
Method
call
deps/boost/boost/thread/future.hpp:4465
↓ 6 callers
Method
canonicalize
Change the mer to its canonical representation
deps/jellyfish-2.2.0/swig/python/jellyfish.py:133
↓ 6 callers
Method
cend
<b>Effects</b>: Returns a const_iterator to the end of the list. <b>Throws</b>: Nothing. <b>Complexity</b>: Constant.
deps/boost/boost/intrusive/slist.hpp:594
↓ 6 callers
Function
check_find_result
deps/boost/boost/algorithm/string/detail/find_format_store.hpp:74
↓ 6 callers
Function
childAt
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:1220
↓ 6 callers
Function
clear
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled.h:577
↓ 6 callers
Function
clearVertices
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:247
↓ 6 callers
Function
clippedEndPosition
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:815
↓ 6 callers
Function
close
deps/seqan-library-2.0.0/include/seqan/system/system_mutex.h:205
↓ 6 callers
Method
close
deps/boost/libs/locale/src/shared/message.cpp:61
↓ 6 callers
Function
compare
<b>Effects</b>: Determines the effective length rlen of the string to compare as the smaller of size() and str.size(). The function then compares the
deps/boost/boost/container/string.hpp:2651
↓ 6 callers
Function
construct_from_tuple
deps/boost/boost/unordered/detail/implementation.hpp:1471
↓ 6 callers
Function
convert
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_view.h:433
↓ 6 callers
Function
convertAlignment
deps/seqan-library-2.0.0/include/seqan/consensus/consensus_base.h:200
↓ 6 callers
Function
copy_if
deps/boost/boost/algorithm/cxx11/copy_if.hpp:32
↓ 6 callers
Function
copy_until
deps/boost/boost/algorithm/cxx11/copy_if.hpp:103
↓ 6 callers
Function
copy_while
deps/boost/boost/algorithm/cxx11/copy_if.hpp:67
↓ 6 callers
Function
count
deps/boost/boost/chrono/duration.hpp:487
↓ 6 callers
Function
createIntervalTree
deps/seqan-library-2.0.0/include/seqan/misc/interval_tree.h:907
↓ 6 callers
Method
crend
deps/boost/boost/array.hpp:111
↓ 6 callers
Method
data
direct access to data (read-only)
deps/boost/boost/array.hpp:164
↓ 6 callers
Function
date
Default constructor constructs with not_a_date_time
deps/boost/boost/date_time/gregorian/greg_date.hpp:51
↓ 6 callers
Function
dependent
deps/seqan-library-2.0.0/include/seqan/sequence/string_cstyle.h:432
↓ 6 callers
Function
dimension
deps/seqan-library-2.0.0/include/seqan/align/matrix_base.h:383
↓ 6 callers
Function
divide
deps/boost/libs/system/test/error_code_test.cpp:61
↓ 6 callers
Method
do_size_doubling
Whether we attempt to double the size of the hash when full.
deps/jellyfish-2.2.0/include/jellyfish/hash_counter.hpp:88
↓ 6 callers
Method
emplace_assign
deps/boost/boost/optional/optional.hpp:408
↓ 6 callers
Method
emplace_assign
deps/boost/boost/optional/detail/old_optional_implementation.hpp:372
↓ 6 callers
Function
empty
deps/boost/boost/container/detail/tree.hpp:848
↓ 6 callers
Function
empty
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2361
↓ 6 callers
Function
empty
deps/seqan-library-2.0.0/include/seqan/index/find_index.h:171
↓ 6 callers
Method
empty
access method
deps/boost/boost/test/utils/lazy_ostream.hpp:40
↓ 6 callers
Function
emptyParentEdge
deps/seqan-library-2.0.0/include/seqan/index/index_wotd.h:655
↓ 6 callers
Function
end
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:725
↓ 6 callers
Function
end
deps/seqan-library-2.0.0/include/seqan/sequence/string_cstyle.h:339
↓ 6 callers
Method
epptr
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:948
↓ 6 callers
Function
equal
deps/boost/boost/range/iterator_range_core.hpp:109
↓ 6 callers
Function
equal_range
deps/boost/boost/intrusive/splaytree_algorithms.hpp:372
↓ 6 callers
Method
equivalent
deps/boost/boost/system/error_code.hpp:647
↓ 6 callers
Function
erase
@copydoc ::boost::intrusive::bstree::erase(const_iterator)
deps/boost/boost/intrusive/sgtree.hpp:619
↓ 6 callers
Function
erase
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled.h:660
↓ 6 callers
Method
erase
<b>Effects</b>: Erases the element pointed by i of the list. No destructors are called. <b>Returns</b>: the first element remaining beyond the remove
deps/boost/boost/intrusive/slist.hpp:995
↓ 6 callers
Method
erase_after_and_dispose
deps/boost/boost/intrusive/slist.hpp:1047
↓ 6 callers
Method
failed_test_count
Gets the number of failed tests.
tests/gtest/src/gtest-all.cc:2218
↓ 6 callers
Method
failed_test_count
Gets the number of failed tests.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:2218
↓ 6 callers
Function
find_head
deps/boost/boost/algorithm/string/find.hpp:247
↓ 6 callers
Method
find_node_impl
deps/boost/boost/unordered/detail/implementation.hpp:3447
↓ 6 callers
Function
find_tail
deps/boost/boost/algorithm/string/find.hpp:278
↓ 6 callers
Function
first_max_element
deps/boost/boost/algorithm/minmax_element.hpp:297
↓ 6 callers
Function
first_min_element
deps/boost/boost/algorithm/minmax_element.hpp:265
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