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github.com/EarlhamInst/KAT
/ functions
Functions
22,481 in github.com/EarlhamInst/KAT
⨍
Functions
22,481
◇
Types & classes
25,829
↓ 12 callers
Method
trim
lib/src/matrix_metadata_extractor.cc:28
↓ 12 callers
Function
uninitialized_move_alloc
F models ForwardIterator
deps/boost/boost/container/detail/copy_move_algo.hpp:284
↓ 12 callers
Function
unlink
@copydoc ::boost::intrusive::bstree_algorithms::unlink(const node_ptr&)
deps/boost/boost/intrusive/rbtree_algorithms.hpp:245
↓ 12 callers
Method
val
deps/jellyfish-2.2.0/include/jellyfish/large_hash_array.hpp:46
↓ 12 callers
Method
valid
deps/boost/boost/thread/future.hpp:215
↓ 12 callers
Function
valueToString
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:3418
↓ 12 callers
Method
write
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:3589
↓ 12 callers
Method
write
deps/jellyfish-2.2.0/include/jellyfish/text_dumper.hpp:26
↓ 12 callers
Method
write
deps/seqan-library-2.0.0/include/seqan/statistics/statistics_markov_model.h:404
↓ 11 callers
Function
BOOST_PREVENT_MACRO_SUBSTITUTION
deps/boost/boost/chrono/duration.hpp:523
↓ 11 callers
Method
BaseGenerator
tests/gtest/gtest.h:10204
↓ 11 callers
Method
BaseGenerator
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:10204
↓ 11 callers
Function
CountIf
tests/gtest/src/gtest-all.cc:683
↓ 11 callers
Function
CountIf
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:683
↓ 11 callers
Function
PrintTupleTo
tests/gtest/gtest.h:10016
↓ 11 callers
Function
PrintTupleTo
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:10016
↓ 11 callers
Function
SEQAN_ASSERT_EQ_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2477
↓ 11 callers
Function
SEQAN_ASSERT_LT_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2528
↓ 11 callers
Function
SWIG_CheckState
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:323
↓ 11 callers
Function
SWIG_CheckState
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:421
↓ 11 callers
Function
SWIG_CheckState
deps/jellyfish-2.2.0/swig/perl5/swig_wrap.cpp:313
↓ 11 callers
Function
_capacityReturned
deps/seqan-library-2.0.0/include/seqan/sequence/sequence_interface.h:1271
↓ 11 callers
Function
abs
deps/boost/boost/rational.hpp:963
↓ 11 callers
Function
arrayCopyForward
deps/seqan-library-2.0.0/include/seqan/basic/array_construct_destruct.h:709
↓ 11 callers
Function
assignTarget
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:531
↓ 11 callers
Function
assignValueById
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:2034
↓ 11 callers
Function
atEnd
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_iterator_edge.h:266
↓ 11 callers
Function
begin
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:703
↓ 11 callers
Function
begin
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:2010
↓ 11 callers
Method
begin
deps/boost/boost/range/iterator_range_core.hpp:221
↓ 11 callers
Method
cbegin
deps/boost/boost/array.hpp:78
↓ 11 callers
Method
cbegin
deps/boost/boost/intrusive/bstree.hpp:154
↓ 11 callers
Function
ceil
deps/seqan-library-2.0.0/include/seqan/math/math_rational.h:568
↓ 11 callers
Method
clear_and_dispose
deps/boost/boost/intrusive/slist.hpp:409
↓ 11 callers
Function
construct_node_from_args
deps/boost/boost/unordered/detail/implementation.hpp:1904
↓ 11 callers
Function
container
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:611
↓ 11 callers
Method
count
lib/src/input_handler.cc:180
↓ 11 callers
Function
countGaps
deps/seqan-library-2.0.0/include/seqan/align/gaps_base.h:512
↓ 11 callers
Function
create_file
deps/boost/libs/filesystem/test/operations_test.cpp:123
↓ 11 callers
Function
current_exception_diagnostic_information
deps/boost/boost/exception/diagnostic_information.hpp:40
↓ 11 callers
Function
dispatch
deps/boost/boost/filesystem/path_traits.hpp:226
↓ 11 callers
Function
e
(bG,bF)
deps/boost/libs/locale/doc/html/jquery.js:16
↓ 11 callers
Function
emittedProbability
deps/seqan-library-2.0.0/include/seqan/statistics/statistics_markov_model.h:819
↓ 11 callers
Function
end
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:2028
↓ 11 callers
Function
erase
deps/seqan-library-2.0.0/include/seqan/misc/set.h:257
↓ 11 callers
Method
first
deps/boost/boost/fusion/view/joint_view/joint_view.hpp:66
↓ 11 callers
Function
for_each
deps/boost/boost/mpl/for_each.hpp:95
↓ 11 callers
Function
from_dump
deps/boost/boost/stacktrace/stacktrace.hpp:295
↓ 11 callers
Method
get
deps/boost/boost/chrono/io/time_point_io.hpp:270
↓ 11 callers
Method
get
deps/boost/boost/interprocess/sync/spin/wait.hpp:58
↓ 11 callers
Function
get_current_thread_data
deps/boost/libs/thread/src/pthread/thread.cpp:144
↓ 11 callers
Method
get_end_node
deps/boost/boost/intrusive/slist.hpp:175
↓ 11 callers
Function
get_offset
deps/boost/boost/date_time/date_duration_types.hpp:64
↓ 11 callers
Method
get_previous_start
deps/boost/boost/unordered/detail/implementation.hpp:2960
↓ 11 callers
Method
get_val_for_key
Get the value, stored in *val, associated with key. If the key is not found, false is returned, otherwise true is returned and *val is updated. If car
deps/jellyfish-2.2.0/include/jellyfish/large_hash_array.hpp:358
↓ 11 callers
Function
goFurther
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_base.h:475
↓ 11 callers
Method
has_value
deps/boost/boost/thread/future.hpp:1382
↓ 11 callers
Function
invoke
deps/boost/boost/thread/detail/invoke.hpp:278
↓ 11 callers
Function
isIntegerArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:312
↓ 11 callers
Function
isNegative
deps/seqan-library-2.0.0/include/seqan/basic/alphabet_math.h:281
↓ 11 callers
Function
is_partitioned_until
deps/boost/boost/algorithm/is_partitioned_until.hpp:32
↓ 11 callers
Method
is_special
deps/boost/boost/date_time/int_adapter.hpp:129
↓ 11 callers
Method
key_eq
deps/boost/boost/unordered/unordered_map.hpp:1655
↓ 11 callers
Function
length
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_concat_direct.h:604
↓ 11 callers
Function
lexicalCast
deps/seqan-library-2.0.0/include/seqan/stream/lexical_cast.h:118
↓ 11 callers
Function
make_checked_formatter
deps/boost/libs/algorithm/string/test/find_format_test.cpp:40
↓ 11 callers
Method
mutex
deps/boost/boost/thread/win32/mutex.hpp:29
↓ 11 callers
Method
nb_hashes
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:83
↓ 11 callers
Method
notify_all
deps/boost/boost/thread/pthread/condition_variable.hpp:145
↓ 11 callers
Function
open
deps/seqan-library-2.0.0/include/seqan/system/system_mutex.h:197
↓ 11 callers
Function
option
deps/boost/boost/test/utils/runtime/parameter.hpp:306
↓ 11 callers
Function
pop
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_base.h:480
↓ 11 callers
Method
pop_front
<b>Effects</b>: Erases the first element of the list. No destructors are called. <b>Throws</b>: Nothing. <b>Complexity</b>: Constant. <b>Note</b>:
deps/boost/boost/intrusive/slist.hpp:476
↓ 11 callers
Function
posAdd
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:887
↓ 11 callers
Method
priv_long_addr
deps/boost/boost/container/string.hpp:363
↓ 11 callers
Function
pushBack
deps/seqan-library-2.0.0/include/seqan/misc/dequeue.h:301
↓ 11 callers
Method
r
deps/jellyfish-2.2.0/include/jellyfish/rectangular_binary_matrix.hpp:95
↓ 11 callers
Method
rdbuf
deps/boost/boost/format/alt_sstream.hpp:149
↓ 11 callers
Function
removeEdge
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:415
↓ 11 callers
Function
repLength
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:678
↓ 11 callers
Function
requestBucket
deps/seqan-library-2.0.0/include/seqan/index/index_qgram.h:967
↓ 11 callers
Function
resizeEdgeMap
deps/seqan-library-2.0.0/include/seqan/graph_types/property_map_generic.h:105
↓ 11 callers
Function
reverseComplement
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_shortcuts.h:276
↓ 11 callers
Function
setEndPosition
deps/seqan-library-2.0.0/include/seqan/sequence/segment_infix.h:317
↓ 11 callers
Function
size
deps/boost/boost/test/tree/test_unit.hpp:186
↓ 11 callers
Method
splice_after
<b>Requires</b>: prev must point to an element contained by this list or to the before_begin() element <b>Effects</b>: Transfers all the elements of
deps/boost/boost/intrusive/slist.hpp:1260
↓ 11 callers
Function
split_unix
deps/boost/libs/program_options/src/split.cpp:17
↓ 11 callers
Function
starts_with
deps/boost/boost/algorithm/string/predicate.hpp:57
↓ 11 callers
Function
test_good_prefix
deps/boost/libs/chrono/test/io/duration_output.cpp:10
↓ 11 callers
Function
test_good_prefix_system_clock
deps/boost/libs/chrono/test/io/time_point_output.cpp:29
↓ 11 callers
Function
throw_bad_alloc
deps/boost/boost/container/throw_exception.hpp:52
↓ 11 callers
Function
ticks
deps/boost/boost/date_time/time_duration.hpp:200
↓ 11 callers
Function
to_upper_copy
deps/boost/boost/algorithm/string/case_conv.hpp:119
↓ 11 callers
Method
unique
<b>Effects</b>: Removes adjacent duplicate elements or adjacent elements that are equal from the list. No destructors are called. <b>Throws</b>: If s
deps/boost/boost/intrusive/slist.hpp:1680
↓ 11 callers
Function
upperBoundAlignedReads
deps/seqan-library-2.0.0/include/seqan/store/store_align.h:563
↓ 11 callers
Function
value
deps/seqan-library-2.0.0/include/seqan/sequence/sequence_interface.h:572
↓ 10 callers
Function
DeathTestAbort
Routine for aborting the program which is safe to call from an exec-style death test child process, in which case the error message is propagated back
tests/gtest/src/gtest-all.cc:6745
↓ 10 callers
Function
DeathTestAbort
Routine for aborting the program which is safe to call from an exec-style death test child process, in which case the error message is propagated back
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:6745
↓ 10 callers
Function
PrintToString
tests/gtest/gtest.h:10038
↓ 10 callers
Function
PrintToString
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:10038
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