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github.com/DeepGraphLearning/S3F
/ types & classes
Types & classes
15 in github.com/DeepGraphLearning/S3F
⨍
Functions
80
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Types & classes
15
↓ 1 callers
Class
Dropout
Combined dropout for tuples (s, V). Takes tuples (s, V) as input and as output.
s3f/gvp_layer.py:180
↓ 1 callers
Class
GVPConv
Graph convolution / message passing with Geometric Vector Perceptrons. Takes in a graph with node and edge embeddings, and returns new no
s3f/gvp_layer.py:226
↓ 1 callers
Class
GVPLayerNorm
Combined LayerNorm for tuples (s, V). Takes tuples (s, V) as input and as output.
s3f/gvp_layer.py:202
↓ 1 callers
Class
Protein
Protein structure representation.
s3f/protein.py:35
↓ 1 callers
Class
_VDropout
Vector channel dropout where the elements of each vector channel are dropped together.
s3f/gvp_layer.py:156
Class
CATH
s3f/dataset.py:198
Class
FusionNetwork
s3f/model.py:76
Class
GVP
Geometric Vector Perceptron. See manuscript and README.md for more details. :param in_dims: tuple (n_scalar, n_vector) :param ou
s3f/gvp_layer.py:90
Class
GVPConvLayer
Full graph convolution / message passing layer with Geometric Vector Perceptrons. Residually updates node embeddings with aggregated inc
s3f/gvp_layer.py:293
Class
GVPGNN
Modified based on https://github.com/drorlab/gvp-pytorch/blob/main/gvp/models.py GVP-GNN for Model Quality Assessment as described in manuscr
s3f/gvp.py:162
Class
MutantDataset
s3f/dataset.py:71
Class
MyESM
s3f/model.py:13
Class
ProteinGym
s3f/dataset.py:57
Class
ResidueTypePrediction
s3f/task.py:11
Class
SurfGVP
s3f/gvp.py:25