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Functions34 in github.com/Daniel-Liu-c0deb0t/cute-nucleotides

⨍ Functions 34 ◇ Types & classes 2

↓ 6 callersFunctionn_to_bits_lut

Encode `{A, T/U, C, G}` from the byte string into pairs of bits (`{00, 10, 01, 11}`) packed into 64-bit integers, by using a naive scalar method.

src/n_to_bits.rs:34

↓ 3 callersFunctionn_to_bits2_lut

Encode each triplet of `{A, T/U, C, G, N}` from the byte string into 7 bits, then pack every 9 triplets into a single 64-bit integer, by using a naive

src/n_to_bits2.rs:37

↓ 1 callersFunctionbits_to_n2_lut

Decode the 9 triplets of `{A, T/U, C, G, N}` that are packed into every 64-bit integer into a byte string, by using a naive scalar method.

src/n_to_bits2.rs:78

↓ 1 callersFunctionbits_to_n2_pdep

Decode the 9 triplets of `{A, T/U, C, G, N}` that are packed into every 64-bit integer into a byte string, by using a vectorized method with fast modu

src/n_to_bits2.rs:196

↓ 1 callersFunctionbits_to_n_clmul

Decode pairs of bits from packed 64-bit integers to get a byte string of `{A, T/U, C, G}`, by using a vectorized method with the `clmul` (carry-less m

src/n_to_bits.rs:346

↓ 1 callersFunctionbits_to_n_lut

Decode pairs of bits from packed 64-bit integers to get a byte string of `{A, T/U, C, G}`, by using a naive scalar method.

src/n_to_bits.rs:51

↓ 1 callersFunctionbits_to_n_pdep

Decode pairs of bits from packed 64-bit integers to get a byte string of `{A, T/U, C, G}`, by using a vectorized method with the `pdep` instruction an

src/n_to_bits.rs:309

↓ 1 callersFunctionbits_to_n_shuffle

Decode pairs of bits from packed 64-bit integers to get a byte string of `{A, T/U, C, G}`, by using a vectorized method with the `srli` (bit shift) in

src/n_to_bits.rs:265

↓ 1 callersFunctionget_bits

(repeat: usize)

benches/bench_n_to_bits.rs:76

↓ 1 callersFunctionget_bits_undetermined

(repeat: usize)

benches/bench_n_to_bits.rs:80

↓ 1 callersFunctionget_nucleotides

(repeat: usize)

benches/bench_n_to_bits.rs:68

↓ 1 callersFunctionget_nucleotides_undetermined

(repeat: usize)

benches/bench_n_to_bits.rs:72

↓ 1 callersFunctionn_to_bits2_pext

Encode each triplet of `{A, T/U, C, G, N}` from the byte string into 7 bits, then pack every 9 triplets into a single 64-bit integer, by using a vecto

src/n_to_bits2.rs:118

↓ 1 callersFunctionn_to_bits_movemask

Encode `{A, T/U, C, G}` from the byte string into pairs of bits (`{00, 10, 01, 11}`) packed into 64-bit integers, by using a vectorized method with th

src/n_to_bits.rs:172

↓ 1 callersFunctionn_to_bits_mul

Encode `{A, T/U, C, G}` from the byte string into pairs of bits (`{00, 10, 01, 11}`) packed into 64-bit integers, by using a vectorized method with mu

src/n_to_bits.rs:213

↓ 1 callersFunctionn_to_bits_pext

Encode `{A, T/U, C, G}` from the byte string into pairs of bits (`{00, 10, 01, 11}`) packed into 64-bit integers, by using a vectorized method with th

src/n_to_bits.rs:80

↓ 1 callersFunctionn_to_bits_shift

Encode `{A, T/U, C, G}` from the byte string into pairs of bits (`{00, 10, 01, 11}`) packed into 64-bit integers, by using a vectorized method with th

src/n_to_bits.rs:121

Functionbench_bits_to_n

(c: &mut Criterion)

benches/bench_n_to_bits.rs:37

Functionbench_bits_to_n2

(c: &mut Criterion)

benches/bench_n_to_bits.rs:52

Functionbench_n_to_bits

(c: &mut Criterion)

benches/bench_n_to_bits.rs:9

Functionbench_n_to_bits2

(c: &mut Criterion)

benches/bench_n_to_bits.rs:25

Functiontest_bits_to_n2_lut

src/n_to_bits2.rs:282

Functiontest_bits_to_n2_pdep

src/n_to_bits2.rs:295

Functiontest_bits_to_n_clmul

src/n_to_bits.rs:466

Functiontest_bits_to_n_lut

src/n_to_bits.rs:420

Functiontest_bits_to_n_pdep

src/n_to_bits.rs:460

Functiontest_bits_to_n_shuffle

src/n_to_bits.rs:454

Functiontest_n_to_bits2_lut

src/n_to_bits2.rs:275

Functiontest_n_to_bits2_pext

src/n_to_bits2.rs:288

Functiontest_n_to_bits_lut

src/n_to_bits.rs:413

Functiontest_n_to_bits_movemask

src/n_to_bits.rs:440

Functiontest_n_to_bits_mul

src/n_to_bits.rs:447

Functiontest_n_to_bits_pext

src/n_to_bits.rs:426

Functiontest_n_to_bits_shift

src/n_to_bits.rs:433