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Types & classes43 in github.com/COMBINE-lab/alevin-fry

⨍ Functions 221◇ Types & classes 43

src/utils.rs:221

ClassAttributeMap

src/eq_class.rs:358

ClassAttributeMapEqClassIter

src/eq_class.rs:453

ClassBasicEqClassPayload

Most basic equivalence class payload with just a count.

src/utils.rs:75

ClassBootstrapHelper

Bootstrap output configuration. Bootstrap summary statistics (mean and variance across replicates) are written as sparse MTX files: `bootstraps_mean.

src/quant.rs:126

ClassCellEqClass

src/eq_class.rs:132

EnumCellFilterMethod

src/cellfilter.rs:52

EnumCellFilterMethod

src/atac/cellfilter.rs:56

ClassDeduplicateOpts

src/atac/prog_opts.rs:21

ClassEqClassAlnProbView

src/eq_class.rs:422

InterfaceEqClassPayload

Trait that allows us to paramaterize the payload stored along with and equivalence class. The most basic (required) information is a count. However,

src/utils.rs:58

src/eq_class.rs:314

ClassEqMapEntry

src/eq_class.rs:147

src/eq_class.rs:141

src/quant.rs:217

src/collate.rs:212

src/atac/collate.rs:176

ClassGenPermitListOpts

src/prog_opts.rs:67

ClassGenPermitListOpts

src/atac/prog_opts.rs:8

src/atac/sort.rs:36

ClassIndexedEqList

NOTE: this is _clearly_ redundant with the EqMap below. we should re-factor so that EqMap makes use of this class rather than replicates its members

src/eq_class.rs:154

ClassInternalVersionInfo

src/utils.rs:1096

EnumKnownRecordType

src/utils.rs:286

ClassLongReadEqClassPayload

Equivalence class payload with a count a probability vector.

src/utils.rs:162

ClassMultinomial

src/multinomial.rs:9

InterfaceOptionalAlignmentExtras

src/utils.rs:227

src/knee_finding.rs:3

src/utils.rs:122

EnumPugEdgeType

src/pugutils.rs:38

ClassPugResolutionStatistics

src/pugutils.rs:46

[builder(name = "QuantOptsBuilder")]

src/prog_opts.rs:23

ClassQuantOutputInfo

src/quant.rs:211

EnumResolutionStrategy

src/quant.rs:81

ClassSampleBarcodeInfo

Result of loading a sample barcode file with rotation/canonical structure.

src/cellfilter.rs:1066

EnumSampleBarcodeOri

src/prog_opts.rs:60

EnumSampleCorrectionMode

src/prog_opts.rs:46

EnumSplicedAmbiguityModel

src/quant.rs:62

ClassTempAttributeMap

src/eq_class.rs:351

ClassUnfilteredBarcodeHist

src/cellfilter.rs:1448

EnumVersionParseError

src/utils.rs:1123

ClassWorkerConfig

src/quant.rs:397

ClassWorkerSharedState

src/quant.rs:414