Method setSex

src/GenomeCopyNumber.cpp:97–119

}

void GenomeCopyNumber::setSex(std::string sex) {
    sex_=sex;
    //remove chrY if female:
    if (sex.compare("XX")==0) {
        vector<ChrCopyNumber>::iterator it;
        for ( it=chrCopyNumber_.begin() ; it != chrCopyNumber_.end(); it++ ) {
            string::size_type pos = 0;
            if ( ( pos = it->getChromosome().find("Y", pos)) != string::npos ) {
                chrCopyNumber_.erase(it);
                cout << "..Will not consider chrY..\n";

                int success = chromosomesInd_.erase ("Y");
                if (success) {
                    cout << "..Erased chrY from the list of chromosomes\n";
                } else {
                    cout << "..Was not able to erase chrY from the list of chromosomes\n";
                }
                return;
            }
        }

    }
}

void GenomeCopyNumber::setBAFtrue() {
    hasBAF_=1;