Method compare

src/EntryCNV.cpp:109–125

}

float EntryCNV::compare(EntryCNV c2, int overlapPrecision, int & left, int & right, float ploidy, float controlPloidy) { //return overlap
    if (chr_.compare(c2.getChr())!=0)
        return 0;
    if ((copyNumber_>ploidy && c2.getCopyNumber()>controlPloidy) || (copyNumber_<ploidy && c2.getCopyNumber()<controlPloidy) || (copyNumber_==ploidy && c2.getCopyNumber()==controlPloidy)) {
        int startControl = c2.getStart()-overlapPrecision; //to get larger window in the control..
        int endControl = c2.getEnd()+overlapPrecision;

        if (endControl<start_ || startControl>end_)
            return 0;
        left = max(start_,startControl);
        right = min(end_,endControl);
        return (right-left+1)/(end_-start_+1);
    } else {
        return 0;
    }

}