Method removeLowReadCountWindows

src/GenomeCopyNumber.cpp:1113–1119

}

void GenomeCopyNumber::removeLowReadCountWindows(GenomeCopyNumber & controlCopyNumber,int RCThresh) {
    cout << "..will remove all windows with read count in the control less than "<<RCThresh<<"\n";
	vector<ChrCopyNumber>::iterator it;
    for ( it=chrCopyNumber_.begin() ; it != chrCopyNumber_.end(); it++ ) {
        it->removeLowReadCountWindows(controlCopyNumber.getChrCopyNumber(it->getChromosome()), RCThresh);
	}
}

void GenomeCopyNumber::removeLowReadCountWindowsFromControl(int RCThresh) {
    cout << "..will process the control file as well: removing all windows with read count in the control less than "<<RCThresh<<"\n";