Method printCNVs

src/GenomeCopyNumber.cpp:2921–2935

}

void GenomeCopyNumber::printCNVs (std::string const& outFile) {
	std::ofstream file (outFile.c_str());
	for (int i = 0; i < (int)CNVs_.size(); i++) {
	    if (CNVs_[i].getCopyNumber()>-1) {
            if (sex_.compare("XY")==0 && (CNVs_[i].getChr().find("X")!=string::npos || CNVs_[i].getChr().find("Y")!=string::npos)) {
                file << CNVs_[i].printEntryCNV(ploidy_*0.5);
	        } else {
                file << CNVs_[i].printEntryCNV(ploidy_);
	        }

            file << "\n";
	    }
	}
	file.close();
}

vector <EntryCNV> GenomeCopyNumber::getCNVs () {
    return CNVs_;