Functions — github.com/BoevaLab/FREEC

CodeHub MCPcopy Create free account

hub / github.com/BoevaLab/FREEC / functions

Functions640 in github.com/BoevaLab/FREEC

⨍ Functions 640◇ Types & classes 40

Methodgetvector

src/Help.cpp:34

Functionhmatrixtd

Reduction of a Hermitian matrix which is given by its higher or lower triangular part to a real tridiagonal matrix using unitary similarity

src/ortfac.cpp:2613

Functionhmatrixtdunpackq

Unpacking matrix Q which reduces a Hermitian matrix to a real tridiagonal form. Input parameters: A - the result of a HMatrixTD subrouti

src/ortfac.cpp:2788

src/ap.cpp:1044

src/GenomeCopyNumber.cpp:93

MethodifHasRatio

src/GenomeCopyNumber.cpp:1133

src/ap.cpp:1041

src/ThreadPool.h:40

MethodintersectWithBedtools

src/BAFpileup.cpp:245

Functioninvbinomialdistribution

Inverse binomial distribution Finds the event probability p such that the sum of the terms 0 through k of the Binomial probability density is equal t

src/binomialdistr.cpp:196

Functioninvchisquaredistribution

Inverse of complemented Chi-square distribution Finds the Chi-square argument x such that the integral from x to infinity of the Chi-square density i

src/chisquaredistr.cpp:135

Inverse of the error function Cephes Math Library Release 2.8: June, 2000 Copyright 1984, 1987, 1988, 1992, 2000 by Stephen L. Moshier *************

src/normaldistr.cpp:212

Functioninvpoissondistribution

Inverse Poisson distribution Finds the Poisson variable x such that the integral from 0 to x of the Poisson density is equal to the given probability

src/poissondistr.cpp:122

MethodisMainThread

src/ThreadPool.h:54

MethodisOneThreadFinished

src/ThreadPool.cpp:139

FunctionisSpaceCharacter

src/myFunc.cpp:1376

Copying of LinearModel strucure INPUT PARAMETERS: LM1 - original OUTPUT PARAMETERS: LM2 - copy -- ALGLIB -- Copyright 15.03.2009

src/linreg.cpp:613

src/linreg.cpp:776

"Packs" coefficients and creates linear model in ALGLIB format (LRUnpack reversed). INPUT PARAMETERS: V - coefficients, array[0..NVar

src/linreg.cpp:432

Functionlrprocess

Procesing INPUT PARAMETERS: LM - linear model X - input vector, array[0..NVars-1]. Result: value of linear model regress

src/linreg.cpp:459

Functionlrserialize

Serialization of LinearModel strucure INPUT PARAMETERS: LM - original OUTPUT PARAMETERS: RA - array of real numbers which stor

src/linreg.cpp:637

Functionlrunserialize

Unserialization of DecisionForest strucure INPUT PARAMETERS: RA - real array which stores decision forest OUTPUT PARAMETERS: LM

src/linreg.cpp:659

src/main.cpp:168

Methodmake_assertion

Functionmatrixvectormultiply

src/blas.cpp:243

src/ap.cpp:1053

src/ap.cpp:1063

Methodmcopyblock

This subroutine copies matrix from non-aligned non-contigous storage to aligned contigous storage A: * MxN * non-aligned * non-contigous * may be tr

src/ialglib.cpp:482

Methodmcopyblock_complex

This subroutine copies matrix from non-aligned non-contigous storage to aligned contigous storage A: * MxN * non-aligned * non-contigous * may be tr

src/ialglib.cpp:596

Methodmcopyunblock

This subroutine copies matrix from aligned contigous storage to non- aligned non-contigous storage A: * MxN * aligned * contigous * stride is alglib

src/ialglib.cpp:537

Methodmcopyunblock_complex

This subroutine copies matrix from aligned contigous storage to non-aligned non-contigous storage A: * 2*alglib_c_block*alglib_c_block doubles (only

src/ialglib.cpp:663

src/ap.cpp:1058

src/ap.cpp:1068

This subroutine calculates fast MxN real matrix-vector product: y := beta*y + alpha*A*x using either generic C code or native optimizations (if

src/ialglib.cpp:112

This subroutine calculates fast 32x32 real matrix-vector product: y := beta*y + alpha*A*x using either generic C code or native optimizations (i

src/ialglib.cpp:44

Methodmv_complex

This subroutine calculates fast MxN complex matrix-vector product: y := beta*y + alpha*A*x using either generic C code or native optimizations (

src/ialglib.cpp:279

Methodmv_complex_generic

This is generic C implementation of mv_complex It may work with unaligned data. ********************************************************************/

src/ialglib.cpp:288

Methodmv_generic

This is generic C implementation of mv. It may work with unaligned data. ********************************************************************/

src/ialglib.cpp:121

src/myFunc.cpp:39

MethodnextNoNALength

src/ChrCopyNumber.cpp:1148

MethodnextNoNAMedian

src/ChrCopyNumber.cpp:1140

Functionnormaldistribution

Normal distribution function Returns the area under the Gaussian probability density function, integrated from minus infinity to x:

src/normaldistr.cpp:197

Methodoperator!=

Methodoperator*

Methodoperator+

Methodoperator-

Methodoperator/

Methodoperator==

ap::complex operations ********************************************************************/

src/ap.cpp:1047

Functionpoissoncdistribution

Complemented Poisson distribution Returns the sum of the terms k+1 to infinity of the Poisson distribution: inf. j -- -m m > e --

src/poissondistr.cpp:93

Functionpoissondistribution

Poisson distribution Returns the sum of the first k+1 terms of the Poisson distribution: k j -- -m m > e -- -- j! j=0

src/poissondistr.cpp:55

MethodprintDensity

src/GenomeDensity.cpp:223

MethodprintPloidy

src/GenomeCopyNumber.cpp:3377

MethodprintRatioBedGraph

src/GenomeCopyNumber.cpp:2986

MethodprocessPileUPLine

src/SNPinGenome.cpp:236

MethodprocessRead

src/GenomeCopyNumber.cpp:3793

MethodprocessReadWithBowtie

src/GenomeCopyNumber.cpp:4131

MethodprocessSNPLine

src/SNPinGenome.cpp:36

Functionpythag2

src/blas.cpp:338

Methodrandominteger

src/ap.cpp:1032

Methodrandomreal

src/ap.cpp:1020

Methodraw_vector

MethodreadPileUP

src/SNPinGenome.cpp:359

MethodrecalcFlanks

src/GenomeCopyNumber.cpp:1750

MethodrecalcFlanksForIndeces

src/ChrCopyNumber.cpp:1341

MethodremoveLargeExons

src/GenomeCopyNumber.cpp:4179

Functionrmatrixhessenberg

Reduction of a square matrix to upper Hessenberg form: Q'*A*Q = H, where Q is an orthogonal matrix, H - Hessenberg matrix. Input parameters: A

src/ortfac.cpp:2089

Functionrmatrixhessenbergunpackh

Unpacking matrix H (the result of matrix A reduction to upper Hessenberg form) Input parameters: A - output of RMatrixHessenberg subroutine.

src/ortfac.cpp:2216

Functionrmatrixhessenbergunpackq

Unpacking matrix Q which reduces matrix A to upper Hessenberg form Input parameters: A - output of RMatrixHessenberg subroutine. N -

src/ortfac.cpp:2150

Functionrmatrixlefttrsm

Same as CMatrixLeftTRSM, but for real matrices OpType may be only 0 or 1. -- ALGLIB routine -- 15.12.2009 Bochkanov Sergey *************

src/ablas.cpp:1078

Functionrmatrixlqunpackl

Unpacking of matrix L from the LQ decomposition of a matrix A Input parameters: A - matrices Q and L in compact form. Out

src/ortfac.cpp:954

Functionrmatrixmv

Matrix-vector product: y := op(A)*x INPUT PARAMETERS: M - number of rows of op(A) N - number of columns of op(A) A - target m

src/ablas.cpp:642

Functionrmatrixqrunpackr

Unpacking of matrix R from the QR decomposition of a matrix A Input parameters: A - matrices Q and R in compact form. Out

src/ortfac.cpp:770

Functionrmatrixrank1

Rank-1 correction: A := A + u*v' INPUT PARAMETERS: M - number of rows N - number of columns A - target matrix, MxN submatrix

src/ablas.cpp:474

Functionrmatrixrighttrsm

Same as CMatrixRightTRSM, but for real matrices OpType may be only 0 or 1. -- ALGLIB routine -- 15.12.2009 Bochkanov Sergey ************

src/ablas.cpp:968

Functionrmatrixsyrk

Same as CMatrixSYRK, but for real matrices OpType may be only 0 or 1. -- ALGLIB routine -- 16.12.2009 Bochkanov Sergey *****************

src/ablas.cpp:1295

Functionrmatrixtranspose

Cache-oblivous real "copy-and-transpose" Input parameters: M - number of rows N - number of columns A - source matrix, MxN su

src/ablas.cpp:309

src/ap.cpp:1035

Functionrowidxabsmax

src/blas.cpp:105

FunctionrunEM_linear

src/myFunc.cpp:1395

MethodsetAllNormal

src/GenomeCopyNumber.cpp:560

src/ChrCopyNumber.cpp:345

MethodsetBAFtrue

src/GenomeCopyNumber.cpp:121

src/SNPinGenome.cpp:198

MethodsetChromosome

src/SNPatChr.cpp:43

MethodsetNormalContamination

src/GenomeCopyNumber.cpp:86

MethodsetPloidy

src/GenomeCopyNumber.cpp:946

MethodsetWESanalysis

src/GenomeCopyNumber.cpp:4314

Methodsetbounds

Methodsetcontent

Methodsetcontent

Methodsetlength

MethodshiftNeutalRatioTo1

src/GenomeCopyNumber.cpp:3223

standard functions ********************************************************************/

src/ap.cpp:1013

Functionsmatrixtd

Reduction of a symmetric matrix which is given by its higher or lower triangular part to a tridiagonal matrix using orthogonal similarity transformati

src/ortfac.cpp:2311

Functionsmatrixtdunpackq

Unpacking matrix Q which reduces symmetric matrix to a tridiagonal form. Input parameters: A - the result of a SMatrixTD subroutine N

src/ortfac.cpp:2475

src/GenomeDensity.cpp:149

src/ChrDensity.cpp:66

← previous next →501–600 of 640, ranked by callers