Functions — github.com/BoevaLab/FREEC

CodeHub MCPcopy Create free account

hub / github.com/BoevaLab/FREEC / functions

Functions640 in github.com/BoevaLab/FREEC

⨍ Functions 640◇ Types & classes 40

src/SeekSubclones.cpp:132

src/ThreadPool.h:78

MethodThreadPool

src/ThreadPool.h:183

MethodThreadPoolManager

src/ThreadPool.cpp:13

Method_i_cmatrixgemmf

complex GEMM kernel ********************************************************************/

src/ialglib.cpp:785

Method_i_cmatrixlefttrsmf

complex TRSM kernel ********************************************************************/

src/ialglib.cpp:1013

Method_i_cmatrixrank1f

complex rank-1 kernel ********************************************************************/

src/ialglib.cpp:1338

Method_i_cmatrixrighttrsmf

complex TRSM kernel ********************************************************************/

src/ialglib.cpp:861

Method_i_cmatrixsyrkf

complex SYRK kernel ********************************************************************/

src/ialglib.cpp:1166

Method_i_rmatrixgemmf

This is real GEMM kernel ********************************************************************/

src/ialglib.cpp:710

Method_i_rmatrixlefttrsmf

real TRSM kernel ********************************************************************/

src/ialglib.cpp:1093

Method_i_rmatrixrank1f

real rank-1 kernel ********************************************************************/

src/ialglib.cpp:1393

Method_i_rmatrixrighttrsmf

real TRSM kernel ********************************************************************/

src/ialglib.cpp:941

Method_i_rmatrixsyrkf

real SYRK kernel ********************************************************************/

src/ialglib.cpp:1254

Function_vdotproduct

Function_vmoveneg

Methodabscomplex

MethodaddBAFinfo

src/GenomeCopyNumber.cpp:3537

MethodaddInfoFromAPileUp

src/SNPinGenome.cpp:476

src/ap.cpp:1566

Service routines: ********************************************************************/

src/ap.cpp:1538

MethodassignValues

src/SNPinGenome.cpp:381

Functionbidiagonalsvddecomposition

src/bdsvd.cpp:163

Functionbinomialdistribution

Binomial distribution Returns the sum of the terms 0 through k of the Binomial probability density: k -- ( n ) j n-j > ( ) p (1-

src/binomialdistr.cpp:62

MethodcalculateBAFBreakpoints

src/GenomeCopyNumber.cpp:236

MethodcalculateFlankLength

src/BAFpileup.cpp:62

MethodcalculateLogRatio

src/GenomeDensity.cpp:232

MethodcalculateLogRatio

src/ChrDensity.cpp:108

MethodcalculateMedianAround

src/GenomeCopyNumber.cpp:1026

MethodcalculateMedianRatioAround

src/GenomeCopyNumber.cpp:955

MethodcalculateNewBoundaries

src/BAFpileup.cpp:158

MethodcalculateNormalizationConstant

src/GenomeCopyNumber.cpp:1643

MethodcalculatePloidy

src/GenomeCopyNumber.cpp:3227

MethodcalculateRatioUsingCG_Regression

src/GenomeCopyNumber.cpp:1205

MethodcalculateSDAndMed

src/GenomeCopyNumber.cpp:3266

MethodcalculateSDs

src/GenomeCopyNumber.cpp:3305

MethodcalculateVarianceForNormalCopy

src/GenomeCopyNumber.cpp:3343

MethodcalculateXiSum

src/GenomeCopyNumber.cpp:3242

MethodcalculateXiSum

src/ChrCopyNumber.cpp:1186

Functioncalculateadev

ADev Input parameters: X - sample (array indexes: [0..N-1]) N - sample size Output parameters: ADev- ADev -- ALGLIB --

src/descriptivestatistics.cpp:129

Functioncalculatemedian

Median calculation. Input parameters: X - sample (array indexes: [0..N-1]) N - sample size Output parameters: Median -- ALGLI

src/descriptivestatistics.cpp:174

Functioncalculatepercentile

Percentile calculation. Input parameters: X - sample (array indexes: [0..N-1]) N - sample size, N>1 P - percentile (0<=P<=1)

src/descriptivestatistics.cpp:322

MethodcheckOneThreadFinished

src/ThreadPool.cpp:120

Functionchisquarecdistribution

Complemented Chi-square distribution Returns the area under the right hand tail (from x to infinity) of the Chi square probability density function w

src/chisquaredistr.cpp:105

Functionchisquaredistribution

Chi-square distribution Returns the area under the left hand tail (from 0 to x) of the Chi square probability density function with v degrees of free

src/chisquaredistr.cpp:64

Functioncmatrixlefttrsm

This subroutine calculates op(A^-1)*X where: * X is MxN general matrix * A is MxM upper/lower triangular/unitriangular matrix * "op" may be identity t

src/ablas.cpp:864

Functioncmatrixlq

LQ decomposition of a rectangular complex matrix of size MxN Input parameters: A - matrix A whose indexes range within [0..M-1, 0..N-1] M

src/ortfac.cpp:505

Functioncmatrixlqunpackl

Unpacking of matrix L from the LQ decomposition of a matrix A Input parameters: A - matrices Q and L in compact form. Out

src/ortfac.cpp:1327

Functioncmatrixlqunpackq

Partial unpacking of matrix Q from LQ decomposition of a complex matrix A. Input parameters: A - matrices Q and R in compact form.

src/ortfac.cpp:1191

Functioncmatrixmv

Matrix-vector product: y := op(A)*x INPUT PARAMETERS: M - number of rows of op(A) M>=0 N - number of columns of op(A)

src/ablas.cpp:534

Functioncmatrixqr

QR decomposition of a rectangular complex matrix of size MxN Input parameters: A - matrix A whose indexes range within [0..M-1, 0..N-1] M

src/ortfac.cpp:373

Functioncmatrixqrunpackq

Partial unpacking of matrix Q from QR decomposition of a complex matrix A. Input parameters: A - matrices Q and R in compact form.

src/ortfac.cpp:1004

Functioncmatrixqrunpackr

Unpacking of matrix R from the QR decomposition of a matrix A Input parameters: A - matrices Q and R in compact form. Out

src/ortfac.cpp:1141

Functioncmatrixrank1

Rank-1 correction: A := A + u*v' INPUT PARAMETERS: M - number of rows N - number of columns A - target matrix, MxN submatrix

src/ablas.cpp:431

Functioncmatrixrighttrsm

This subroutine calculates X*op(A^-1) where: * X is MxN general matrix * A is NxN upper/lower triangular/unitriangular matrix * "op" may be identity t

src/ablas.cpp:734

Functioncmatrixsyrk

This subroutine calculates C=alpha*A*A^H+beta*C or C=alpha*A^H*A+beta*C where: * C is NxN Hermitian matrix given by its upper/lower triangle * A is

src/ablas.cpp:1206

Functioncmatrixtranspose

Cache-oblivous complex "copy-and-transpose" Input parameters: M - number of rows N - number of columns A - source matrix, MxN

src/ablas.cpp:250

Functioncolumnidxabsmax

src/blas.cpp:86

Methodconst_raw_vector

MethodcreateBAF

src/ChrCopyNumber.cpp:1622

MethodcreateBAFvalues

src/ChrCopyNumber.cpp:1626

MethodcreateBedFileWithChromosomeLengths

src/BAFpileup.cpp:186

MethodcreatePileUpFile

src/BAFpileup.cpp:294

MethoddeleteFlanks

src/GenomeCopyNumber.cpp:1742

MethoddeleteFragment

src/ChrCopyNumber.cpp:1549

MethodfillCGprofile

src/GenomeCopyNumber.cpp:3387

MethodfillInRatio

src/GenomeCopyNumber.cpp:1284

MethodfillMyHash

src/GenomeCopyNumber.cpp:270

src/ap.cpp:1073

Methodfp_greater

src/ap.cpp:1103

Methodfp_greater_eq

src/ap.cpp:1111

src/ap.cpp:1087

Methodfp_less_eq

src/ap.cpp:1095

src/ap.cpp:1081

MethodgetCoveredPart

src/ChrCopyNumber.cpp:703

MethodgetEndCoord

src/EntryCNV.cpp:84

MethodgetFragmentLengths_notNA

src/ChrCopyNumber.cpp:1106

MethodgetInstance

src/ThreadPool.h:45

MethodgetMaxThreads

src/ThreadPool.h:51

MethodgetMedianRatio

src/GenomeCopyNumber.cpp:1627

src/ChrCopyNumber.cpp:1103

MethodgetSegmentsInfo

src/SeekSubclones.cpp:42

MethodgetStartCoord

src/EntryCNV.cpp:81

MethodgetTotalNumberOfPairs

src/GenomeDensity.cpp:145

MethodgetTotalNumberOfPairs

src/GenomeCopyNumber.cpp:219

src/ChrCopyNumber.cpp:1165

Functionget_quartiles

src/myFunc.cpp:2727

Functionget_sum

Calculate sum ---------------------------------------------------------------------------

src/myFunc.cpp:112

Methodgetcolumn

Methodgethighbound

Methodgethighbound

Methodgetlowbound

Methodgetlowbound

← previous next →401–500 of 640, ranked by callers