MCPcopy Create free account

hub / github.com/BobHanson/Jmol-SwingJS / functions

Functions24,809 in github.com/BobHanson/Jmol-SwingJS

↓ 30 callersMethodtransformPtScrT3
RENDERERS ONLY @param ptXYZ @param pointScreen
src/org/jmol/viewer/TransformManager.java:1558
↓ 29 callersFunction_b
(a,b,d,e,f,g)
assets/inchi/inchi.js:85
↓ 29 callersMethodaddJmolScript
(String script)
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java:1929
↓ 29 callersMethodaddWindowListener
()
src/org/jmol/console/JmolConsole.java:175
↓ 29 callersMethodatomExpressionAt
(int index)
src/org/jmol/script/ScriptExpr.java:709
↓ 29 callersMethodgetInfoM
(String keyName)
src/org/jmol/modelset/ModelSet.java:1574
↓ 29 callersMethodgetStyleBase
Gets this InterfaceBase style. @return this InterfaceBase style.
src/fr/orsay/lri/varna/models/rna/ModeleBase.java:115
↓ 29 callersFunctionhn
(a,b)
assets/inchi/inchi.js:83
↓ 29 callersMethodinitialize
(AtomSetCollectionReader r, int modDim)
src/org/jmol/adapter/smarter/MSInterface.java:28
↓ 29 callersMethodisArrayParameter
(int i)
src/org/jmol/script/ScriptParam.java:1096
↓ 29 callersMethodisDeleted
()
src/org/jmol/util/Node.java:121
↓ 29 callersMethodparseInt
(String s)
src/org/jmol/adapter/readers/xml/CDXMLParser.java:721
↓ 29 callersMethodreadByteArray
(byte[] b, int off, int len)
src/javajs/api/GenericBinaryDocument.java:31
↓ 29 callersMethodsetToolTipText
(String tip)
src/org/jmol/api/JmolAbstractButton.java:7
↓ 28 callersFunctionYe
(a,d)
assets/inchi/inchi.js:81
↓ 28 callersMethodaddNextToken
()
src/org/jmol/script/ScriptTokenParser.java:415
↓ 28 callersMethodappendLogData
(String s)
src/org/jmol/minimize/forcefield/Calculations.java:154
↓ 28 callersFunctionc
(a)
doc/varna/VARNA_features_files/ga.js:7
↓ 28 callersFunctionc
(a)
doc/varna/VARNA_mouse_files/ga.js:7
↓ 28 callersFunctionc
(a)
doc/varna/VARNA_specs_files/ga.js:7
↓ 28 callersFunctionc
(a)
doc/varna/VARNA_menu_files/ga.js:7
↓ 28 callersMethodequals
(Object ss)
src/org/jmol/smiles/SmilesSearch.java:2083
↓ 28 callersMethodfillCylinderBits
(byte endcaps, int diameter, P3d screenA, P3d screenB)
src/org/jmol/api/JmolRendererInterface.java:149
↓ 28 callersMethodgetAngle
()
src/fr/orsay/lri/varna/models/naView/Connection.java:91
↓ 28 callersMethodgetBR
(String string)
src/javajs/util/Rdr.java:349
↓ 28 callersMethodgetBoolean
(String key)
src/org/openscience/jmol/app/jmolpanel/PreferencesDialog.java:709
↓ 28 callersMethodgetConnection
(int i)
src/fr/orsay/lri/varna/models/naView/Loop.java:55
↓ 28 callersMethodgetDataObj
Retrieve a data object @param key @param bsSelected selected atoms; for DATA_AF only @param dataType see JmolDataManager interface
src/org/jmol/viewer/Viewer.java:4387
↓ 28 callersMethodgetInchi
@param vwr @param atoms @param molData can be String or InputStream @param options @return InChI or SMILES or InChIKey or internal InChI structure det
src/org/jmol/api/JmolInChI.java:17
↓ 28 callersMethodgetTitle
()
src/jspecview/api/JSVViewPanel.java:6
↓ 28 callersMethodgetTokFromName
(String name)
src/org/jmol/script/T.java:1489
↓ 28 callersMethodinterrupt
()
src/org/jmol/api/JmolNavigatorInterface.java:38
↓ 28 callersMethodisAntialiased
()
src/org/jmol/api/JmolGraphicsInterface.java:7
↓ 28 callersMethodmul2
Sets the value of this matrix to the result of multiplying the two argument matrices together. @param m1 the first matrix @param m2 the
src/javajs/util/M3d.java:537
↓ 28 callersMethodparseDouble
(String s)
src/org/jmol/adapter/readers/xml/CDXMLParser.java:729
↓ 28 callersMethodscale
Multiplies each element of this matrix by a scalar. @param scalar The scalar multiplier.
src/javajs/util/M3d.java:513
↓ 28 callersMethodset
(JmolRendererInterface g3d, GData gdata)
src/org/jmol/g3d/G3DRenderer.java:8
↓ 28 callersMethodsetIdentity
Sets this Matrix4f to identity.
src/javajs/util/M4d.java:170
↓ 28 callersMethodsetIntProperty
(String key, int value)
src/org/jmol/viewer/Viewer.java:6804
↓ 28 callersMethodsetStatusStructureModified
(int atomIndex, int modelIndex, int mode, String msg, int n, BS bsAto
src/org/jmol/viewer/StatusManager.java:388
↓ 28 callersMethodtokPeek
()
src/org/jmol/script/ScriptTokenParser.java:297
↓ 27 callersMethodaddXPt4
(P4d pt)
src/org/jmol/script/ScriptMathProcessor.java:293
↓ 27 callersMethodevalError
(String message, String strUntranslated)
src/org/jmol/script/ScriptError.java:93
↓ 27 callersMethodevalStringQuiet
(String strScript)
src/org/jmol/viewer/Viewer.java:4928
↓ 27 callersMethodfillMeshData
(MeshData meshData, int mode, IsosurfaceMesh mesh)
src/org/jmol/jvxl/api/MeshDataServer.java:36
↓ 27 callersMethodgetAtomName
()
src/org/jmol/modelset/Atom.java:665
↓ 27 callersMethodgetColumn
(int i)
src/org/jmol/awtjs/swing/AbstractTableModel.java:9
↓ 27 callersMethodgetData
(String label, BS bsSelected, int dataType)
src/org/jmol/api/JmolDataManager.java:47
↓ 27 callersMethodgetSpectrumAt
Returns the <code>Spectrum</code> at the specified index @param index the index of the <code>Spectrum</code> @return the <code>Spectrum</code>
src/jspecview/common/GraphSet.java:323
↓ 27 callersMethodgetXYCoords
Returns the array of coordinates @return the array of coordinates
src/jspecview/common/Spectrum.java:137
↓ 27 callersMethodisCenterParameter
(int i)
src/org/jmol/script/ScriptParam.java:267
↓ 27 callersMethodlength
Returns the "logical size" of this {@code BitSet}: the index of the highest set bit in the {@code BitSet} plus one. Returns zero if the {@code BitSet}
src/javajs/util/BS.java:470
↓ 27 callersMethodparseDouble
(String info)
src/org/jmol/adapter/readers/spartan/SpartanArchive.java:613
↓ 27 callersMethodsetStringProperty
(String key, String value)
src/org/jmol/viewer/Viewer.java:6331
↓ 27 callersMethodshowDialog
(AType type)
src/jspecview/common/PanelData.java:1454
↓ 27 callersMethodtoPixelX
(double dx)
src/jspecview/common/GraphSet.java:555
↓ 27 callersFunctionui
(c,e,f)
assets/inchi/inchi.js:84
↓ 27 callersMethodunitize
(T3d ptFrac)
src/org/jmol/api/SymmetryInterface.java:307
↓ 26 callersMethodaddAtomXYZSymName
(String[] tokens, int i, String sym, String name)
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java:1527
↓ 26 callersMethodaddDef
(String key, Object value)
src/javajs/export/PDFObject.java:54
↓ 26 callersMethoddrawImage
(Object g, Object img, int x, int y, int width, int height, boolean isDTI)
src/org/jmol/api/GenericPlatform.java:55
↓ 26 callersMethodfloatAt
(Lst<Object> list, int i)
src/org/jmol/adapter/readers/pymol/PyMOLReader.java:1692
↓ 26 callersMethodgetAtomSetCenter
(BS bs)
src/org/jmol/modelset/ModelSet.java:1510
↓ 26 callersMethodgetBIS
(byte[] bytes)
src/javajs/util/Rdr.java:345
↓ 26 callersMethodgetNitrogenAtom
()
src/org/jmol/modelsetbio/AminoMonomer.java:106
↓ 26 callersFunctionkg
(a)
assets/inchi/inchi.js:82
↓ 26 callersMethodmouseAction
(int mode, long time, int x, int y, int count, int buttonMods)
src/org/jmol/api/EventManager.java:13
↓ 26 callersMethodnewM3
Constructs a new matrix with the same values as the Matrix3f parameter. @param m1 The source matrix. @return m
src/javajs/util/M3d.java:65
↓ 26 callersMethodputByte
(int b)
src/javajs/img/ImageEncoder.java:125
↓ 26 callersMethodscale
(Mesh mesh, double newScale)
src/org/jmol/shapespecial/Draw.java:1177
↓ 26 callersMethodsetAtomCoordXYZ
(Atom atom, double x, double y, double z)
src/org/jmol/adapter/readers/xtal/SiestaReader.java:275
↓ 26 callersMethodsetTaintedAll
()
src/jspecview/common/PanelData.java:284
↓ 26 callersMethodshowConfirmDialog
BH SwingJS Initiate a confirm dialog with callbacks. @param optionPanel @param title @param ok @param cancel @param close_final_error optiona
src/fr/orsay/lri/varna/views/VueUI.java:1687
↓ 26 callersMethodstore
Saves the display schemes to file in XML format @throws Exception
src/jspecview/application/DisplaySchemesProcessor.java:108
↓ 26 callersMethodtoByteArray
()
src/javajs/util/OC.java:396
↓ 26 callersMethodtoJSON
(String infoType, Object info)
src/javajs/util/PT.java:536
↓ 26 callersMethodwrite
(byte[] b, int off, int n)
src/javajs/api/GenericOutputChannel.java:9
↓ 25 callersFunctionLl
(b,c,d)
assets/inchi/inchi.js:76
↓ 25 callersMethodave
average of two tuples @param a @param b
src/javajs/util/T3d.java:252
↓ 25 callersMethodbytesToInt
(byte[] bytes, int j, boolean isBigEndian)
src/javajs/util/BC.java:27
↓ 25 callersMethoddeleteBits
this one slides deleted bits out of a pattern. deleteBits 101011b, 000011b --> 1010b Java 1.4, not 1.3 @param bs @param bsDelete @return
src/org/jmol/util/BSUtil.java:156
↓ 25 callersMethodendElement
(String uri, String localName, String qName)
src/fr/orsay/lri/varna/utils/RNAMLParser.java:261
↓ 25 callersMethoderrorDialog
Pops up an error Dialog displaying an exception in an human-readable way. @param error The exception to display within the Dialog
src/fr/orsay/lri/varna/components/VARNAPanel.java:3339
↓ 25 callersMethodescapeColor
(int argb)
src/org/jmol/util/Escape.java:54
↓ 25 callersMethodfillDoubleArray
fills a double array with string data from a file @param s string data containing doubles @param width column width or 0 to read tokens
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java:1727
↓ 25 callersMethodgetBondType
Get the order of the bond. This could be covalent order, but also could be NEAR, FAR, etc. @return order
src/org/jmol/util/SimpleEdge.java:21
↓ 25 callersMethodgetColixO
(Object obj)
src/org/jmol/util/C.java:304
↓ 25 callersMethodgetFilePath
()
src/jspecview/common/PeakInfo.java:171
↓ 25 callersMethodgetFloat
(Lst<Object> list, int i)
src/org/jmol/jvxl/readers/PyMOLMeshReader.java:273
↓ 25 callersMethodgetIntensity
()
src/fr/orsay/lri/varna/models/annotations/ChemProbAnnotation.java:120
↓ 25 callersMethodgetModelAuxiliaryInfo
(int modelIndex)
src/org/jmol/modelset/ModelSet.java:1694
↓ 25 callersMethodgetModelBS
Get the set of models associated with a set of atoms. This must allow for appended models. @param atomList @param allTrajectories @return bit set of
src/org/jmol/modelset/ModelSet.java:1610
↓ 25 callersMethodgetOtherAtom
(SmilesAtom a)
src/org/jmol/smiles/SmilesBond.java:259
↓ 25 callersMethodgetPopupMenu
()
src/org/jmol/api/SC.java:33
↓ 25 callersMethodgetSpectrum
()
src/jspecview/api/AnnotationData.java:16
↓ 25 callersMethodgetSpectrum
()
src/jspecview/common/GraphSet.java:310
↓ 25 callersMethodgetXmlData
@param name @param data @param withTag @param allowSelfCloseOption TODO @return trimmed contents or tag + contents, never closing tag @throws Exceptio
src/org/jmol/jvxl/readers/XmlReader.java:79
↓ 25 callersMethodhasMoreElements
normal iterator predicate @return boolean
src/org/jmol/bspt/CubeIterator.java:101
↓ 25 callersMethodisDirectory
()
src/org/jmol/api/GenericFileInterface.java:11
↓ 25 callersMethodparseInt
(String info)
src/org/jmol/adapter/readers/spartan/SpartanArchive.java:609
← previousnext →501–600 of 24,809, ranked by callers