Function removeMarked

Assembly/AssemblyAlgorithms.h:115–133

 */
template <typename Graph>
size_t removeMarked(Graph* pSC)
{
	typedef typename Graph::iterator iterator;

	Timer timer(__func__);
	size_t count = 0;
	for (iterator it = pSC->begin(); it != pSC->end(); ++it) {
		if (it->second.deleted())
			continue;
		if (it->second.marked()) {
			removeSequenceAndExtensions(pSC, *it);
			count++;
		}
		pSC->pumpNetwork();
	}
	if (count > 0)
		logger(1) << "Removed " << count << " marked k-mer.\n";
	return count;
}

} // namespace AssemblyAlgorithms