| 271 | |
| 272 | template <class KmerType> |
| 273 | void loadDataStructures(Graph& g, vector<KmerType>& prefixes, |
| 274 | unordered_map<KmerType, vector<ContigNode> >& suffixMap, |
| 275 | int argc, char** argv) |
| 276 | { |
| 277 | if (optind < argc) { |
| 278 | for (; optind < argc; optind++) |
| 279 | readContigs(argv[optind], g, prefixes, suffixMap); |
| 280 | } else |
| 281 | readContigs("-", g, prefixes, suffixMap); |
| 282 | g_contigNames.lock(); |
| 283 | } |
| 284 | |
| 285 | /** Build contig overlap graph for standard de Bruijn graph */ |
| 286 | void buildOverlapGraph(Graph& g, int argc, char** argv) |
no test coverage detected