Function buildPairedOverlapGraph

AdjList/AdjList.cpp:309–320

Build contig overlap graph for paired de Bruijn graph */

#if PAIRED_DBG
/** Build contig overlap graph for paired de Bruijn graph */
void buildPairedOverlapGraph(Graph& g, int argc, char** argv)
{
	Kmer::setLength(opt::singleKmerSize - 1);
	KmerPair::setLength(opt::k - 1);

	vector<KmerPair> prefixes;
	unordered_map<KmerPair, vector<ContigNode> >
		suffixMap(prefixes.size());

	loadDataStructures(g, prefixes, suffixMap, argc, argv);
	buildOverlapGraph(g, prefixes, suffixMap);
}
#endif

int main(int argc, char** argv)