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Types & classes211 in github.com/BGI-Qingdao/TGS-GapCloser

⨍ Functions 622◇ Types & classes 211
↓ 83 callersClasslend
common/log/log.h:46
↓ 83 callersClasslstart
common/log/log.h:45
↓ 1 callersClassItem
algorithm/linear_fitting/Minimum_multiplication.h:10
ClassACCESS
algorithm/graph/GraphTest.cpp:94
ClassACCESS
algorithm/graph/SPFSearch_test.cpp:93
ClassAlignResult
algorithm/align/AlignReuslt.h:16
ClassAlignResult
appcommon/SmithWaterman_OO.h:32
ClassAllAligned
main_src_tool/Ref2Gap.cpp:54
ClassAppConfig
discards/ONTGapDev01.cpp:44
ClassAppConfig
discards/ORGC.cpp:216
ClassAppConfig
discards/ONTGapCorrecter.cpp:35
ClassAppConfig
main_src_ont/tgsgapcloser.cpp:52
ClassAppConfig
main_src_ont/tgsgapcandidate.cpp:46
ClassAppConfig
main_src_ont/tgsseqgen.cpp:18
ClassBiKeyHash
algorithm/multi_key_hash/MultiKeyHash.h:21
ClassBiList
algorithm/bi_list/bi_list.h:10
EnumCIGAR
biocommon/sam_bam/sam_parser.h:41
EnumCIGAR
biocommon/align_common/align_result.h:19
ClassCollection
algorithm/collection/collection.h:13
ClassContigAlign
main_src_tool/Ref2Gap.cpp:18
ClassContigDetail
appcommon/ScaffInfo.h:11
ClassContigDetail
orientation_correct/ScaffInfo.h:11
ClassContigIndex
appcommon/ScaffInfo.h:50
ClassContigIndex
orientation_correct/ScaffInfo.h:46
ClassContigMapInfo
orientation_correct/OOChecker.cpp:7
ClassContigOrientationVote
orientation_correct/ONT_OrientationCorrecterV3.cpp:146
ClassContigOrientationVote
orientation_correct/ONT_OrientationCorrecterV1.cpp:145
ClassContigOrientationVote
orientation_correct/ONT_OrientationCorrecter.cpp:147
ClassContigOrientationVote
orientation_correct/ONT_OrientationCorrecterV2.cpp:144
ClassData
biocommon/sam_bam/sam_parser.h:32
ClassDelayHeapLinkInfo
algorithm/fibheap/fib_heap.h:235
ClassDepthSearch
algorithm/graph/DepthSearch.h:112
EnumDepthSearchEdgeType
algorithm/graph/DepthSearch.h:23
ClassDepthSearchNode
algorithm/graph/DepthSearch.h:33
ClassDiffDetail
main_src_ont/tgsseqgen.cpp:69
ClassDisJoin_Set
algorithm/disjoin_set/disjoin_set.h:13
ClassEAttr
algorithm/graph/MinTree_test.cpp:22
ClassEdge
algorithm/graph/GraphTest.cpp:24
ClassEdge
algorithm/graph/SPFSearch_test.cpp:15
ClassEdgeIterator
algorithm/graph/Graph.h:70
ClassEnder1
* Classic depth search . Only end at NOT WHITE node */
algorithm/graph/GraphTest.cpp:145
ClassEnder1
* Classic depth search . Only end at NOT WHITE node */
algorithm/graph/SPFSearch_test.cpp:154
ClassEnder2
* Full depth search . END ONLY AT CIRCLE */
algorithm/graph/GraphTest.cpp:178
ClassExtraInfo
biocommon/align_common/align_result.h:10
ClassFLAGS
biocommon/sam_bam/sam_parser.h:66
ClassFasta
biocommon/fasta/fasta.h:100
ClassFastaReader
biocommon/fasta/fasta.h:144
ClassFastq
biocommon/fastq/fastq.h:96
ClassFastqReader
biocommon/fastq/fastq.h:179
ClassFibHeap
algorithm/fibheap/fib_heap.h:90
ClassFileNames
appcommon/fileName.h:10
ClassFileReaderFactory
common/files/file_reader.h:17
ClassFileWriterFactory
common/files/file_writer.h:8
ClassFreq
common/freq/freq.h:9
EnumGapType
biocommon/fasta/fasta.h:77
ClassGraphAccessBase
algorithm/graph/Graph.h:46
ClassGraphEdgeBase
algorithm/graph/Graph.h:12
ClassGraphNodeBase
algorithm/graph/Graph.h:29
ClassHead
biocommon/sam_bam/sam_parser.h:10
EnumHeadType
biocommon/sam_bam/sam_parser.h:12
ClassIDigraphEdgeBase
algorithm/graph/GraphBasic.h:86
ClassIGraphEdgeBasic
algorithm/graph/GraphBasic.h:18
ClassIGraphNodeBasic
algorithm/graph/GraphBasic.h:119
ClassId_Desc_Head
biocommon/fastq/fastq.h:28
ClassId_Desc_Head
biocommon/fasta/fasta.h:38
ClassIncrArray
algorithm/incr_array/incr_array.h:34
ClassInterval
algorithm/interval/Interval.h:61
ClassIntervalDistribution
algorithm/distribution/distribution.h:111
ClassIntervalInfo
algorithm/interval/Interval.h:30
ClassIntervalInfo<Left_Close_Right_Close>
algorithm/interval/Interval.h:54
ClassIntervalInfo<Left_Close_Right_Open>
algorithm/interval/Interval.h:35
ClassIntervalInfo<Left_Open_Right_Close>
algorithm/interval/Interval.h:41
ClassIntervalInfo<Left_Open_Right_Open>
algorithm/interval/Interval.h:48
ClassIntervalPercent
algorithm/distribution/distribution.h:12
EnumIntervalType
algorithm/interval/Interval.h:18
ClassJobQueue
common/multithread/JobQueue.h:12
ClassL_NodeBase
algorithm/graph/SPFSearch_test.cpp:88
ClassLineParser
class MapData * * Parse 1 raw sam data into struct. * * ***************************************************************************/
biocommon/sam_bam/sam_parser.h:159
ClassLinear
algorithm/linear_fitting/Linear.h:8
ClassLinkInfo
orientation_correct/ONT_contigmapper.cpp:49
ClassListDigraph
algorithm/graph/GraphBasic.h:377
ClassListGraph
algorithm/graph/GraphBasic.h:296
ClassListGraphBasic
algorithm/graph/GraphBasic.h:164
ClassMDData
biocommon/sam_bam/sam_parser.h:94
ClassMDData
biocommon/align_common/align_result.h:64
ClassMTEdge
algorithm/graph/MinTree_test.cpp:11
ClassMTSearchNode
algorithm/graph/MinTree.h:37
ClassMTestGraphBasic
algorithm/graph/MinTree_test.cpp:31
ClassMapHelper
common/stl/mapHelper.h:8
ClassMapInfo
orientation_correct/ONT_contigmapper.cpp:9
ClassMapperInfo
discards/ORGC.cpp:61
ClassMatchData
biocommon/sam_bam/sam_parser.h:101
ClassMatchDetail
biocommon/sam_bam/sam_parser.h:89
ClassMatchDetail
biocommon/align_common/align_result.h:44
ClassMatchInfo
biocommon/sam_bam/sam_parser.h:55
ClassMatchInfo
biocommon/align_common/align_result.h:33
ClassMatrix
algorithm/align/ScoreMatrix.h:9
ClassMinTreeHelper
algorithm/graph/MinTree.h:24
ClassMultiThread
common/multithread/MultiThread.h:27
ClassNeedlemanWunsch
algorithm/align/NeedlemanWunsch.h:15
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