Parameters for querying clinical trial data from ClinicalTrials.gov.

Client for interacting with the Wikipedia API.

Information about an external endpoint.

Configuration container for a specific model. Stores model-specific configuration including provider type, API credentials, and deploymen

Definition of a searchable field.

Search parameters for querying variant data from MyVariant.info.

Raised when a search fails to execute.

Error raised when CTS API requests fail.

Filter mutations based on specific mutation or pattern.

Unified client for BioThings APIs (MyGene, MyVariant, MyDisease, MyChem).

Represents an evaluation scenario.

Mock AI assistant for testing MCP tool usage patterns.

Raised when invalid parameters are provided.

Raised when FDA response validation fails.

Configuration for retry behavior.

Represents an evaluation scenario.

Aggregates variant data from multiple external sources.

Circuit breaker implementation.

Configuration for circuit breaker behavior.

Refactored cBioPortal client using centralized HTTP.

Client for cBioPortal search operations.

Standardized paper format with core fields for academic sources

Bibliomantic divination system that augments queries with I Ching wisdom. This class provides the core functionality for integrating ran

Test exception for circuit breaker tests.

Registry for tracking all external endpoints.

Single metric measurement.

Mock mutation object for testing.

A specific mutation occurrence in a study.

Token bucket rate limiter implementation.

Raised when results cannot be parsed.

Client for TCGA/GDC API.

Client for 1000 Genomes data via Ensembl REST API.

Enhanced divination system with rich traditional content

I Ching hexagram database and interpretation system. Implements the traditional 64 hexagram system with simplified interpretations o

Adapter that provides both simple and enhanced interfaces

TCGA/GDC variant annotation data.

cBioPortal variant annotation data.

Enhanced I Ching engine with rich traditional content

Gene information from MyGene.info.

Universal LLM provider supporting multiple model types and providers. This class provides a unified interface for interacting with various LL

Searcher for PubMed papers

Context manager for timing operations.

Filter out non-critical ASGI/Starlette middleware errors.

Client for bioRxiv/medRxiv API. IMPORTANT LIMITATION: bioRxiv/medRxiv APIs do not provide a search endpoint. This implementation works around

Adapter for cBioPortal API calls using centralized HTTP client.

Client for mutation-specific searches in cBioPortal.

Client for Europe PMC API.

Framework for running and scoring evaluations.

Manages connection pools per event loop. This class ensures that each asyncio event loop has its own set of connection pools, preventing cros

Raised when an invalid domain is specified.

Loads and manages local MCP server configurations. This class handles loading server commands from JSON files, managing API keys, and pro

Handles searching across multiple preprint sources.

Custom exception for API-related errors.

Searcher for arXiv papers

Circuit breaker to prevent cascading failures.

Disease information from MyDisease.info.

Drug/chemical information from MyChem.info.

Enhanced variant annotation combining multiple sources.

Custom implementation of Google Scholar paper search

IACR ePrint Archive paper search implementation

Manages multiple MCP server connections and coordinates tool discovery.

Result of a mutation-specific search.

Semantic Scholar paper search implementation

Summary of mutations in a specific study.

Represents a single thought in the thinking process.

1000 Genomes variant annotation data.

Evaluates MCP tools using Anthropic API.

Represents the result of a single conversion within a batch.

Searcher for bioRxiv papers

Summary data from cBioPortal for a gene search.

Request parameters for Europe PMC API.

Result of running an evaluation.

Result of running an evaluation.

Simple LRU cache with TTL support.

Manages the connection to an MCP server and tool discovery.

MCP Server Information Collector. This class connects to MCP servers and collects their tool descriptions, input schemas, and other metad

Searcher for medRxiv papers

Collects and manages performance metrics.

Mock MCP client for testing with Anthropic API.

Parser for unified search queries.

Exception wrapper for HTTP errors that should be retried.

Integration tests for the aggregator.

Tool call caching system implemented with SQLite for multi-process safety

Validator class for unit conversion operations.

Batch multiple article searches to reduce overhead.

Represents a single conversion request within a batch.

Singleton configuration manager for benchmark settings. This class manages all benchmark configurations using a singleton pattern, loadin

Main benchmark runner for testing multiple LLM models. This class orchestrates the execution of benchmark tasks across multiple LLM model

Unified benchmark task generator for single and multi-server configurations