Get information about all studies.

Get cancer type name for a study.

Get Unicode symbol for hexagram

Handle API errors with appropriate messages.

Handle package comparison queries.

Handle Darwin/macOS queries.

Handle Home Manager related queries.

Handle offline mode logic. Returns None if not in offline mode.

Handle package installation queries.

Handle service configuration queries.

Initialize SQLite database

Initialize benchmark by loading data and filtering models

Initialize registry with known endpoints.

Enhanced wisdom integration

Integrate I Ching wisdom with the user's original query. This method creates the bibliomantic integration by prefacing the u

Check if the error is related to Azure content filtering. Args: error_message: Error message to analyze

Check if the error is related to Azure content filtering.

Check if exception should count as failure.

Check if an error is retryable. Args: error_msg: Error message string Returns: True if the error is retryable

Check if the error is related to token limits.

Load API keys from api_key file. Reads key=value pairs from the API key file, ignoring comments and empty lines.

Load all available server names from commands.json

Load local server commands from commands.json. Raises: Exception: If commands.json cannot be loaded

Load enhanced hexagram data with full traditional content

Load all server configurations

Log token consumption statistics for tool descriptions and input schemas

Map TrialPhase enum to NCI phase values.

Map SortOrder enum to NCI sort values.

Map RecruitingStatus enum to NCI status values.

Check if protein change matches pattern. Args: protein_change: The protein change to check Returns: True if

Normalize intervention names to IDs where possible.

Handle failed call. Args: exc: The exception that was raised Returns: True if exception counts as failure

Handle failed call.

Handle successful call.

Handle successful call.

Parse and validate command line arguments

Parse the two rows containing conference information

Parse the conference table

Parse date from IACR format (e.g., '2025-06-02')

Parse date from Semantic Scholar format (e.g., '2025-06-02')

Parse single paper entry from IACR HTML and optionally fetch detailed info

Parse single paper entry from HTML

Parse LLM response to extract a single task JSON object

Parse trial search results from JSON.

Perform the actual evaluation (extracted for retry logic)

Multi-layered retry strategy for planning with ExecutionContext management.

Prefetch common queries to warm up the cache.

Load and prepare combinations for processing

Prepare distraction server configurations

Prepare request data based on method.

Convert request to params dict and extract headers.

Prepare server configurations including required, resident, and distraction servers

Prepare basic task execution information

Print benchmark configuration

Process pending searches in batch.

Process biomarker API response.

Process a single combination

Process intervention search response.

Process tool calls and return results.

Recursively extract values based on the key path.

Register cleanup when event loop is garbage collected.

Resolve user-friendly channel names to actual indices.

Search for diseases using BioThingsClient.

Search for drugs using BioThingsClient.

Search for genes using BioThingsClient.

Perform the actual mutation search with the adapter.

Select random distraction servers for a task to increase diversity Args: required_servers: Servers already used

Select random distraction servers, excluding the current server(s)

ALWAYS use this tool for complex reasoning, analysis, or problem-solving. This facilitates a detailed, step-by-step thinking process that helps b

Set value in nested dictionary using dot-separated path. Args: config: Dictionary to modify path: Dot-separat

Initialize session with random user agent

Initialize session with random user agent

Initialize session with random user agent

Check if enough time has passed to attempt reset.

Check if enough time has passed to attempt reset.

LLM synthesizes a final, comprehensive solution from all execution results.

Simple tokenizer for query strings.

Searches for clinical trials based on specified criteria. Parameters: - call_benefit: Define and summarize why this function is being ca

Update cancer type distribution.

Update command arguments with new port number.

Update hotspot counts from mutations.

Update the accumulated information and execution results after a round. Args: round_results: List of execution results fr

Validate accuracy fields are present

Validate and return API key.

Validate all required fields for current metrics calculation

Validate endpoint key if provided.

Validate execution results field

Validate LLM judge fields are present

Validate a single parameter based on its key.

Validate performance fields are present

Retrieves detailed information for a *single* genetic variant. Parameters: - call_benefit: Define and summarize why this function is bei

Searches for genetic variants based on specified criteria. Parameters: - call_benefit: Define and summarize why this function is being c

Convert version string to tuple for proper sorting.