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Functions1,068 in github.com/0todd0000/spm1d

⨍ Functions 1,068◇ Types & classes 451
↓ 1 callersMethod_build_spmi
(self, alpha, zstar, clusters, p_set, two_tailed)
spm1d/stats/_spm.py:301
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:174
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:229
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:272
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:319
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:441
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:487
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:557
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:633
↓ 1 callersMethod_check_balanced
(self)
spm1d/stats/anova/designs.py:699
↓ 1 callersMethod_check_null
(self)
spm1d/stats/nonparam/_snpm.py:174
↓ 1 callersMethod_check_null
(self)
spm1d/stats/nonparam_old/_snpm.py:171
↓ 1 callersMethod_cluster_inference
(self, clusters, two_tailed, withBonf)
spm1d/stats/_spm.py:358
↓ 1 callersMethod_cluster_inference
(self, alpha, clusters, two_tailed=False)
spm1d/stats/nonparam/_snpm.py:244
↓ 1 callersMethod_constrain_p
(self, alpha, zstar, z, p)
spm1d/stats/nonparam/mgr.py:37
↓ 1 callersMethod_get_clusters
(self, zstar, check_neg, interp, circular, z=None)
spm1d/stats/_spm.py:363
↓ 1 callersMethod_get_clusters
(self, zstar, two_tailed, interp, circular, iterations, cluster_metric, z=None)
spm1d/stats/nonparam/_snpm.py:251
↓ 1 callersMethod_get_repr_ci
(self)
spm1d/stats/ci.py:88
↓ 1 callersMethod_get_repr_header
(self)
spm1d/stats/ci.py:66
↓ 1 callersMethod_get_repr_prob
(self)
spm1d/stats/ci.py:76
↓ 1 callersFunction_helper
(idxset, i)
spm1d/stats/nonparam/util.py:19
↓ 1 callersMethod_isf
(self, a, withBonf)
spm1d/stats/_spm.py:375
↓ 1 callersFunction_legend_manual
(ax, colors=None, labels=None, linestyles=None, markerfacecolors=None, linewidths=None, **kwdargs)
spm1d/_plot.py:290
↓ 1 callersMethod_parse_nodes_argument
(self, nodes)
spm1d/rft1d/prob.py:614
↓ 1 callersMethod_parse_nodes_argument
(self, nodes)
spm1d/rft1d/random.py:77
↓ 1 callersFunction_plot_F_list
(FF, plot_threshold_label=True, plot_p_values=True, autoset_ylim=True)
spm1d/_plot.py:306
↓ 1 callersMethod_printR
(self, x, name='x')
spm1d/data/_base.py:50
↓ 1 callersMethod_rank
This is a slight modification of np.linalg.matrix_rank. The tolerance performs poorly for some matrices Here the tolerance is
spm1d/stats/anova/models.py:45
↓ 1 callersFunction_replaceWith0DpValueIfPossible
(STAT, P, c, csize, z, df, Q, n=1)
spm1d/rft1d/prob.py:82
↓ 1 callersFunction_replaceWithBonferroniIfPossible
(STAT, P, c, csize, z, df, Q, n=1)
spm1d/rft1d/prob.py:74
↓ 1 callersMethod_repr_teststat
(self)
spm1d/stats/_spm.py:294
↓ 1 callersMethod_repr_verbose
(self)
spm1d/stats/_spmlist.py:53
↓ 1 callersMethod_set_axlim
(self)
spm1d/_plot.py:42
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova2onerm.py:18
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova3tworm.py:18
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova2.py:58
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova3onerm.py:18
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova3.py:18
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova2nested.py:17
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova2rm.py:32
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova3rm.py:18
↓ 1 callersMethod_set_datafile
(self)
spm1d/data/uv1d/anova3nested.py:18
↓ 1 callersMethod_set_qi0i1
(self, w)
spm1d/rft1d/random.py:107
↓ 1 callersMethod_set_roi
(self, roi)
spm1d/stats/nonparam/mgr.py:123
↓ 1 callersMethod_set_scale
Compute the scaling factor for restoring a smoothed curve to unit variance. This code is modified from "randomtalk.m" by Matthew Brett (Oct 1999)
spm1d/rft1d/random.py:88
↓ 1 callersMethod_set_stat_calculator
(self)
spm1d/stats/nonparam_old/permuters.py:292
↓ 1 callersMethod_set_teststat_calculator
(self, *args)
spm1d/stats/nonparam_old/permuters.py:19
↓ 1 callersMethod_set_values
(self)
spm1d/data/_base.py:56
↓ 1 callersMethod_setlevel_inference
(self, zstar, clusters, two_tailed, withBonf)
spm1d/stats/_spm.py:386
↓ 1 callersMethod_stack
(self, yA, yB)
spm1d/stats/nonparam_old/permuters.py:295
↓ 1 callersFunction_stack_data
(*args)
spm1d/stats/normality/k2.py:142
↓ 1 callersFunction_stack_data
(*args)
spm1d/stats/normality/sw.py:39
↓ 1 callersMethod_svd
(self)
spm1d/stats/_reml.py:199
↓ 1 callersMethodbuild_secondary_pdfs
(self, zstarlist, circular=False)
spm1d/stats/nonparam_old/permuters.py:412
↓ 1 callersMethodcheck
(self)
spm1d/stats/_datachecks.py:138
↓ 1 callersMethodcheck_balanced_nested
(self, other)
spm1d/stats/anova/factors.py:48
↓ 1 callersMethodcheck_balanced_nested3
(self, other, another)
spm1d/stats/anova/factors.py:57
↓ 1 callersMethodcheck_for_single_responses
(self, dim=1)
spm1d/stats/anova/designs.py:330
↓ 1 callersMethodcheck_for_single_responses
(self, dim=1)
spm1d/stats/anova/designs.py:570
↓ 1 callersMethodcluster_centroids
(self)
spm1d/rft1d/geom.py:541
↓ 1 callersMethodcluster_extents
(self)
spm1d/rft1d/geom.py:554
↓ 1 callersMethodcluster_minima
(self)
spm1d/rft1d/geom.py:572
↓ 1 callersFunctionec_density
(STAT, z, df)
spm1d/rft1d/prob.py:133
↓ 1 callersFunctionec_density_T
Reference: Worsley KJ et al. (1996) Hum Brain Mapp 4:58-73 Reference: Worsley KJ et al. (2004) [Eqn.2 and Table 2]
spm1d/rft1d/prob.py:97
↓ 1 callersFunctionec_density_X2
(z, df)
spm1d/rft1d/prob.py:123
↓ 1 callersFunctionec_density_Z
(z)
spm1d/rft1d/prob.py:91
↓ 1 callersMethodgenerate_sample
(self)
spm1d/rft1d/random.py:131
↓ 1 callersMethodgenerate_sample
(self)
spm1d/rft1d/random.py:208
↓ 1 callersMethodget_Q
(self)
spm1d/stats/anova/factors.py:91
↓ 1 callersMethodget_all_cluster_metrics
(self, z, thresh=3.0, circular=False)
spm1d/stats/nonparam/metrics.py:24
↓ 1 callersMethodget_all_cluster_metrics
(self, z, thresh=3.0, circular=False)
spm1d/stats/nonparam_old/metrics.py:24
↓ 1 callersMethodget_all_clusters
(self, z, zstar, Z, two_tailed=False)
spm1d/stats/nonparam_old/metrics.py:14
↓ 1 callersMethodget_ci
(self, asstr=False, with_brackets=False)
spm1d/stats/ci.py:124
↓ 1 callersMethodget_ciB
(self, asstr=False, with_brackets=False)
spm1d/stats/ci.py:263
↓ 1 callersMethodget_criterion_value
(self, asstr=False, with_brackets=False)
spm1d/stats/ci.py:126
↓ 1 callersMethodget_data
(self)
spm1d/data/_base.py:158
↓ 1 callersMethodget_data
(self)
spm1d/data/_base.py:202
↓ 1 callersMethodget_datum_value
(self, asstr=False, with_brackets=False)
spm1d/stats/ci.py:128
↓ 1 callersMethodget_design_interaction_4way
(self, other, another, yetanother)
spm1d/stats/anova/factors.py:119
↓ 1 callersMethodget_expected_results_as_string
(self)
spm1d/data/_base.py:71
↓ 1 callersMethodget_h0rejection_decision_reason
(self)
spm1d/stats/ci.py:130
↓ 1 callersMethodget_hstar
(self, asstr=False, with_brackets=False)
spm1d/stats/ci.py:133
↓ 1 callersMethodget_label_single
(self)
spm1d/stats/nonparam_old/metrics.py:12
↓ 1 callersMethodget_max_metric
(self, z, thresh=3.0, circular=False)
spm1d/stats/nonparam/metrics.py:34
↓ 1 callersMethodget_nPermUnique_asstr
(self)
spm1d/stats/_clusters.py:176
↓ 1 callersMethodget_p_value_list
(self, zz, zzstar, alpha)
spm1d/stats/nonparam_old/permuters.py:406
↓ 1 callersMethodget_percent
(self, asstr=False)
spm1d/stats/ci.py:135
↓ 1 callersMethodget_signs
(self, labels)
spm1d/stats/nonparam_old/permuters.py:121
↓ 1 callersMethodget_test_stat
(self, labels)
spm1d/stats/nonparam_old/permuters.py:312
↓ 1 callersMethodget_test_stat
(self, ind)
spm1d/stats/nonparam_old/permuters.py:420
↓ 1 callersMethodget_test_stat_mu_subtracted
(self, y)
spm1d/stats/nonparam_old/calculators.py:25
↓ 1 callersMethodget_test_stat_mu_subtracted
(self, y)
spm1d/stats/nonparam_old/calculators.py:33
↓ 1 callersMethodget_test_stat_original
(self)
spm1d/stats/nonparam_old/permuters.py:25
↓ 1 callersFunctionhotellings
One-sample Hotelling's T2 test. :Parameters: - *Y* --- (J x Q x I) numpy array - *mu* --- scalar or (Q x I) array (datum) :Returns: - T
spm1d/stats/hotellings.py:32
↓ 1 callersFunctionhotellings
(y, mu=None, roi=None)
spm1d/stats/nonparam_old/stats.py:93
↓ 1 callersFunctionisf
Inverse survival function
spm1d/rft1d/prob.py:344
↓ 1 callersFunctioniter_all
()
spm1d/data/get.py:3
↓ 1 callersFunctioniter_datasets
(dim=None, testname=None)
spm1d/data/get.py:227
↓ 1 callersFunctionloadmat
(*args)
spm1d/io.py:38
↓ 1 callersMethodmerge
(self, other)
spm1d/stats/_clusters.py:149
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