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Functions1,068 in github.com/0todd0000/spm1d

↓ 415 callersMethodinference
(self, alpha=0.05, cluster_size=0, two_tailed=False, interp=True, circular=False, withBonf=True)
spm1d/stats/_spm.py:403
↓ 306 callersMethodplot
(self, ax=None)
spm1d/stats/ci.py:149
↓ 216 callersMethodget_data
(self)
spm1d/data/_base.py:65
↓ 77 callersMethodadd_main_columns
(self, label, X)
spm1d/stats/anova/designs.py:50
↓ 70 callersMethodplot_threshold_label
(self, **kwdargs)
spm1d/stats/_spm.py:646
↓ 65 callersMethodplot_p_values
(self, **kwdargs)
spm1d/stats/_spm.py:643
↓ 52 callersMethodget_data
(self)
tests/nonparam45/test_np45_roi.py:83
↓ 31 callersMethodget_design_main
(self)
spm1d/stats/anova/factors.py:134
↓ 25 callersMethodget_design_interaction
(self, other)
spm1d/stats/anova/factors.py:95
↓ 22 callersMethodfit
(self, approx_residuals=None)
spm1d/stats/anova/models.py:58
↓ 18 callersFunction_get_data_dim
(y, ismultivariate=False)
spm1d/stats/nonparam_old/stats.py:9
↓ 18 callersFunction_get_snpm
(STAT, perm, nFactors=None)
spm1d/stats/nonparam_old/stats.py:13
↓ 18 callersMethodcheck_balanced
(self, other)
spm1d/stats/anova/factors.py:39
↓ 16 callersMethod__init__
(self)
spm1d/data/_base.py:22
↓ 16 callersFunctionaov
This code is modified from statsmodels.stats.anova_lm
spm1d/stats/anova/ui.py:18
↓ 15 callersMethodplot
(self, color='k', lw=3, label=None)
spm1d/_plot.py:145
↓ 14 callersFunctionresiduals
Compute the D'Agostino-Pearson K2 test statistic continuum for a set of model residuals.
spm1d/stats/normality/k2.py:120
↓ 14 callersFunctionresiduals
(y)
spm1d/stats/normality/sw.py:29
↓ 12 callersMethod_set_ylim
(self, pad=0.075)
spm1d/_plot.py:52
↓ 12 callersFunctionbwlabel
Label clusters in a binary field *b*. This function yields the same output as **scipy.ndimage.measurements.label** but is much faster for 1D field
spm1d/rft1d/geom.py:603
↓ 12 callersMethodisf
Inverse survival function. (see also the survival function: **RFTCalculator.sf**) :Parameters: *alpha* -- upper tail probability (float;
spm1d/rft1d/prob.py:625
↓ 12 callersMethodsf
Survival function. (Equivalent to **RFTCalculator.p.upcrossing**) Probability that 1D Gaussian fields with a smoothness *FWHM* would produce
spm1d/rft1d/prob.py:655
↓ 11 callersFunction_assert_p
(p0, p1, tol=1e-5)
tests/0d/test_0d_c.py:11
↓ 11 callersFunction_assert_p
(p0, p1, tol=1e-5)
tests/0d/test_0d.py:8
↓ 11 callersMethod_get_column_const
(self)
spm1d/stats/anova/designs.py:74
↓ 11 callersMethodget_contrasts
(self)
spm1d/stats/anova/designs.py:58
↓ 11 callersMethodget_design_matrix
(self)
spm1d/stats/anova/designs.py:64
↓ 10 callersMethod__init__
(self, STAT, z, df, fwhm, resels, X=None, beta=None, residuals=None, sigma2=None, roi=None)
spm1d/stats/_spm.py:249
↓ 10 callersFunctiondflist2str
(dfs)
spm1d/stats/_spm.py:27
↓ 10 callersMethodisf
(self, alpha, df, nodes, FWHM, withBonf=False)
spm1d/rft1d/distributions.py:484
↓ 10 callersMethodsf
(self, u, df, nodes, FWHM, withBonf=False)
spm1d/rft1d/distributions.py:492
↓ 9 callersFunction_set_labels
(FF, design)
spm1d/stats/anova/ui.py:136
↓ 9 callersMethodget_design_interaction_3way
(self, other, another)
spm1d/stats/anova/factors.py:106
↓ 9 callersMethodplot_threshold
(self, color='k')
spm1d/_plot.py:245
↓ 8 callersMethod_get_df
(self, df)
spm1d/rft1d/distributions.py:145
↓ 8 callersMethodplot
(self, *args, **kwdargs)
spm1d/_plot.py:75
↓ 7 callersFunction_float_if_possible
(x)
spm1d/rft1d/prob.py:374
↓ 7 callersMethodcheck
(self)
spm1d/stats/_datachecks.py:27
↓ 7 callersMethodget_nPermUnique_asstr
(self)
spm1d/stats/nonparam_old/_snpm.py:38
↓ 7 callersMethodget_test_stat
(self, labels)
spm1d/stats/nonparam_old/permuters.py:23
↓ 7 callersMethodinference
(self, alpha=0.05, iterations=-1, force_iterations=False)
spm1d/stats/nonparam/_snpm.py:85
↓ 7 callersFunctionp2string
(p)
spm1d/stats/_spm.py:29
↓ 7 callersMethodteststat
(self, y, signs)
spm1d/stats/nonparam/calculators.py:38
↓ 6 callersMethod_repr_teststat_short
(self)
spm1d/stats/_spm.py:296
↓ 6 callersMethodcheck_2d
(self, Y)
spm1d/stats/_datachecks.py:36
↓ 6 callersMethodcheck_array
(self, Y)
spm1d/stats/_datachecks.py:43
↓ 6 callersMethodcheck_equal_J
(self, Y0, Y1)
spm1d/stats/_datachecks.py:48
↓ 6 callersMethodcheck_size
(self, Y)
spm1d/stats/_datachecks.py:64
↓ 6 callersMethodcheck_zero_variance
(self, Y, only_warning=False)
spm1d/stats/_datachecks.py:71
↓ 6 callersMethodplot_cloud
(self, Y, facecolor='0.8', edgecolor='0.8', alpha=0.5, edgelinestyle='-')
spm1d/_plot.py:85
↓ 6 callersMethodplot_datum
(self, y=0, color='k', linestyle=':')
spm1d/_plot.py:103
↓ 6 callersMethodset_design_label
(self, label)
spm1d/stats/_spmlist.py:79
↓ 5 callersFunction_assert_p
(p0, p1, tol=1e-5)
tests/0d/test_0d_mv.py:8
↓ 5 callersFunction_assert_p
(p0, p1, tol=1e-5)
tests/0d/test_0d_mv_c.py:10
↓ 5 callersMethod_check_iterations
(self, iterations, alpha, force_iterations, nPermTotal)
spm1d/stats/nonparam_old/_snpm.py:24
↓ 5 callersMethod_set_xlim
(self)
spm1d/_plot.py:49
↓ 5 callersMethodbuild_pdf
(self, iterations=-1)
spm1d/stats/nonparam_old/permuters.py:21
↓ 5 callersMethodget_p_value
(self, z, zstar, alpha, Z=None)
spm1d/stats/nonparam_old/permuters.py:41
↓ 5 callersMethodget_z_critical
(self, alpha=0.05, two_tailed=False)
spm1d/stats/nonparam_old/permuters.py:27
↓ 5 callersMethodinference
(self, alpha=0.05, iterations=-1, force_iterations=False)
spm1d/stats/nonparam_old/_snpm.py:84
↓ 5 callersMethodisf_resels
RFT inverse survival function. (see also the survival function: **rft1d.DISTFLAG.sf**) :Parameters: *alpha* -- upper tail probability (flo
spm1d/rft1d/distributions.py:179
↓ 5 callersMethodset_effect_labels
(self, labels)
spm1d/stats/_spmlist.py:81
↓ 5 callersMethodset_metric
(self, metric_name)
spm1d/stats/nonparam_old/permuters.py:91
↓ 4 callersMethod__init__
(self)
spm1d/rft1d/distributions.py:482
↓ 4 callersMethod_get_all
(self, u, expectations_only=False)
spm1d/rft1d/prob.py:609
↓ 4 callersMethod_get_signs
(self, labels)
spm1d/stats/nonparam_old/permuters.py:119
↓ 4 callersMethod_interp
(self, y, i0, h)
spm1d/rft1d/geom.py:49
↓ 4 callersFunction_set_docstr
(childfn, parentfn, args2remove=None)
spm1d/stats/_spm.py:39
↓ 4 callersMethod_set_roi
(self, roi)
spm1d/stats/nonparam_old/permuters.py:72
↓ 4 callersMethod_set_stat_calculator
(self)
spm1d/stats/nonparam_old/permuters.py:217
↓ 4 callersMethod_set_x
(self, x, Q)
spm1d/_plot.py:46
↓ 4 callersFunction_spm_object
(STAT, z, mgr)
spm1d/stats/nonparam/stats.py:38
↓ 4 callersMethodcheck_1d
(self, x, argnum)
spm1d/stats/_datachecks.py:30
↓ 4 callersMethodcheck_for_single_responses
(self, dim=1)
spm1d/stats/anova/designs.py:180
↓ 4 callersMethodcluster_extents
Upcrossing extents (units: nodes). :Parameters: *y* --- a 1D field *u* --- threshold height *interp* --- interpolate to thres
spm1d/rft1d/geom.py:187
↓ 4 callersMethodget_design_label
(self)
spm1d/stats/nonparam_old/permuters.py:372
↓ 4 callersMethodget_effect_labels
(self)
spm1d/stats/nonparam_old/permuters.py:374
↓ 4 callersMethodget_nPermUnique_asstr
(self)
spm1d/stats/nonparam/_snpm.py:38
↓ 4 callersFunctionget_perm_mgr
(y, mv=False, roi=None)
spm1d/stats/nonparam/mgr.py:171
↓ 4 callersMethodp_cluster
(self, k, u, df, nodes, FWHM, withBonf=False)
spm1d/rft1d/distributions.py:488
↓ 4 callersMethodp_cluster_resels
RFT cluster-level inference. Probability that 1D Gaussian fields with a smoothness of *FWHM* would produce an upcrossing of extent *k* when
spm1d/rft1d/distributions.py:254
↓ 4 callersMethodp_set
(self, c, k, u, df, nodes, FWHM, withBonf=False)
spm1d/rft1d/distributions.py:490
↓ 4 callersMethodp_set_resels
RFT set-level inference. Probability that 1D Gaussian fields with a smoothness of *FWHM* would produce at least *c* upcrossings with a minim
spm1d/rft1d/distributions.py:329
↓ 4 callersMethodplot_errorbar
(self, y, e, x=0, color=None, markersize=10, linewidth=2, hbarw=0.1)
spm1d/_plot.py:106
↓ 4 callersFunctionprint_ci
(obj, note=None)
spm1d/examples/nonparam/v0.4.50/0d/ex_ci_onesample.py:7
↓ 4 callersFunctionprint_ci
(obj, note=None)
spm1d/examples/nonparam/v0.4.50/0d/ex_ci_pairedsample.py:7
↓ 4 callersFunctionprint_ci
(obj, note=None)
spm1d/examples/nonparam/v0.4.50/0d/ex_ci_twosample.py:7
↓ 4 callersFunctionrft
Random Field Theory probabilities and expectations using unified Euler Characteristic (EC) theory. This code is based on "spm_P_RF.m" and "spm_P.m"
spm1d/rft1d/prob.py:161
↓ 4 callersMethodset_calculator
(self, calc)
spm1d/stats/nonparam/mgr.py:52
↓ 4 callersMethodset_permuter
(self, obj)
spm1d/stats/nonparam/mgr.py:55
↓ 4 callersFunctionttest
(y, mu=0, roi=None)
spm1d/stats/nonparam_old/stats.py:121
↓ 3 callersMethod__init__
(self, spmi)
spm1d/stats/ci.py:49
↓ 3 callersMethod__init__
(self, z, perm, nFactors=2)
spm1d/stats/nonparam_old/_snpmlist.py:84
↓ 3 callersMethod__init__
(self, y, *args)
spm1d/stats/nonparam_old/permuters.py:348
↓ 3 callersMethod__init__
(self, nResponses, mu=None)
spm1d/stats/nonparam_old/calculators.py:30
↓ 3 callersMethod__init__
(self, A)
spm1d/stats/anova/factors.py:19
↓ 3 callersFunction_as_float
(x)
spm1d/rft1d/prob.py:366
↓ 3 callersFunction_asfloat
(x)
spm1d/stats/ci.py:176
↓ 3 callersMethod_check_iterations
(self, iterations, alpha, force_iterations, nPermTotal)
spm1d/stats/nonparam/_snpm.py:24
↓ 3 callersMethod_get_ci
(self, ci, asstr=False, with_brackets=False)
spm1d/stats/ci.py:103
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