Function test_multi_match_isconstant

tests/test_motifs.py:557–594

()

def test_multi_match_isconstant():
    T = np.random.rand(2, 64)
    Q = np.random.rand(2, 8)

    m = Q.shape[-1]
    excl_zone = int(np.ceil(m / 4))
    max_distance = 0.3

    T_subseq_isconstant = functools.partial(
        naive.isconstant_func_stddev_threshold, quantile_threshold=0.05
    )

    Q_subseq_isconstant = np.array(
        [
            [True],
            [False],
        ]
    )

    left = naive_multi_match(
        Q,
        T,
        excl_zone,
        max_distance=max_distance,
        T_subseq_isconstant=T_subseq_isconstant,
        Q_subseq_isconstant=Q_subseq_isconstant,
    )

    right = match(
        Q,
        T,
        max_matches=None,
        max_distance=lambda D: max_distance,  # also test lambda functionality
        T_subseq_isconstant=T_subseq_isconstant,
        Q_subseq_isconstant=Q_subseq_isconstant,
    )

    npt.assert_almost_equal(left, right)


def test_motifs():