Function test_aamp_match

tests/test_aamp_motifs.py:191–213

(Q, T)

@pytest.mark.parametrize("Q, T", test_data)
def test_aamp_match(Q, T):
    m = Q.shape[0]
    excl_zone = int(np.ceil(m / 4))
    max_distance = 0.3

    for p in [1.0, 2.0, 3.0]:
        left = naive_aamp_match(
            Q,
            T,
            p=p,
            excl_zone=excl_zone,
            max_distance=max_distance,
        )

        right = aamp_match(
            Q,
            T,
            p=p,
            max_matches=None,
            max_distance=max_distance,
        )

        npt.assert_almost_equal(left, right)


@pytest.mark.parametrize("Q, T", test_data)