Function read_table

plugins/ngs-analysis/scripts/run_fastq_assay_package.py:141–145

(path: Path)

def read_table(path: Path) -> tuple[list[dict[str, str]], list[str]]:
    with path.open(newline="", encoding="utf-8") as handle:
        reader = csv.DictReader(handle, delimiter=detect_delimiter(path))
        rows = [{key: (value or "").strip() for key, value in row.items()} for row in reader]
        return rows, list(reader.fieldnames or [])


def first_present(row: dict[str, str], names: list[str]) -> str: