(args: argparse.Namespace)
| 44 | |
| 45 | |
| 46 | def bqsr_enabled(args: argparse.Namespace) -> bool: |
| 47 | if args.bqsr_mode == "off": |
| 48 | return False |
| 49 | if args.bqsr_mode == "force": |
| 50 | return True |
| 51 | return bool(args.known_sites) |
| 52 | |
| 53 | |
| 54 | def use_gvcf(args: argparse.Namespace, sample_count: int) -> bool: |
no outgoing calls
no test coverage detected