Function tool_preflight

plugins/ngs-analysis/scripts/ngs_run_utils.py:230–242

(required: list[str], optional: list[str] | None = None)

def tool_preflight(required: list[str], optional: list[str] | None = None) -> dict[str, Any]:
    optional = optional or []
    checked = []
    for name in required + optional:
        checked.append(executable_status(name))
    missing_required = [item["name"] for item in checked[: len(required)] if not item["present"]]
    return {
        "ok": not missing_required,
        "required": required,
        "optional": optional,
        "checked": checked,
        "missing_required": missing_required,
    }


def software_versions(commands: dict[str, list[str]]) -> dict[str, str | None]: