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Function read_beamformer

mne/beamformer/_compute_beamformer.py:547–591  ·  view source on GitHub ↗

Read a beamformer filter. Parameters ---------- fname : path-like The filename of the HDF5 file. Returns ------- filter : instance of Beamformer The beamformer filter.

(fname)

Source from the content-addressed store, hash-verified

545
546
547def read_beamformer(fname):
548 """Read a beamformer filter.
549
550 Parameters
551 ----------
552 fname : path-like
553 The filename of the HDF5 file.
554
555 Returns
556 -------
557 filter : instance of Beamformer
558 The beamformer filter.
559 """
560 read_hdf5, _ = _import_h5io_funcs()
561 beamformer = read_hdf5(fname, title="mnepython")
562 if "csd" in beamformer:
563 beamformer["csd"] = CrossSpectralDensity(**beamformer["csd"])
564 # h5io seems to cast `bool` to `int` on round-trip, probably a bug
565 # we should fix at some point (if possible -- could be HDF5 limitation)
566 for key in ("normalize_fwd", "is_free_ori", "is_ssp"):
567 if key in beamformer:
568 beamformer[key] = bool(beamformer[key])
569 for key in ("data_cov", "noise_cov"):
570 if beamformer.get(key) is not None:
571 for pi, p in enumerate(beamformer[key]["projs"]):
572 p = Projection(**p)
573 p["active"] = bool(p["active"])
574 beamformer[key]["projs"][pi] = p
575 beamformer[key] = Covariance(
576 *[
577 beamformer[key].get(arg)
578 for arg in (
579 "data",
580 "names",
581 "bads",
582 "projs",
583 "nfree",
584 "eig",
585 "eigvec",
586 "method",
587 "loglik",
588 )
589 ]
590 )
591 return Beamformer(beamformer)
592
593
594def _proj_whiten_data(M, proj, filters):

Callers 2

test_make_dicsFunction · 0.90
test_make_lcmv_bemFunction · 0.90

Calls 5

_import_h5io_funcsFunction · 0.85
ProjectionClass · 0.85
CovarianceClass · 0.85
BeamformerClass · 0.85

Tested by 2

test_make_dicsFunction · 0.72
test_make_lcmv_bemFunction · 0.72