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README

Named Entity Recognition with Tensorflow

This repo implements a NER model using Tensorflow (LSTM + CRF + chars embeddings).

A better implementation is available here, using tf.data and tf.estimator, and achieves an F1 of 91.21

State-of-the-art performance (F1 score between 90 and 91).

Check the blog post

Task

Given a sentence, give a tag to each word. A classical application is Named Entity Recognition (NER). Here is an example

John   lives in New   York
B-PER  O     O  B-LOC I-LOC

Model

Similar to Lample et al. and Ma and Hovy.

  • concatenate final states of a bi-lstm on character embeddings to get a character-based representation of each word
  • concatenate this representation to a standard word vector representation (GloVe here)
  • run a bi-lstm on each sentence to extract contextual representation of each word
  • decode with a linear chain CRF

Getting started

  1. Download the GloVe vectors with
make glove

Alternatively, you can download them manually here and update the glove_filename entry in config.py. You can also choose not to load pretrained word vectors by changing the entry use_pretrained to False in model/config.py.

  1. Build the training data, train and evaluate the model with
make run

Details

Here is the breakdown of the commands executed in make run:

  1. [DO NOT MISS THIS STEP] Build vocab from the data and extract trimmed glove vectors according to the config in model/config.py.
python build_data.py
  1. Train the model with
python train.py
  1. Evaluate and interact with the model with
python evaluate.py

Data iterators and utils are in model/data_utils.py and the model with training/test procedures is in model/ner_model.py

Training time on NVidia Tesla K80 is 110 seconds per epoch on CoNLL train set using characters embeddings and CRF.

Training Data

The training data must be in the following format (identical to the CoNLL2003 dataset).

A default test file is provided to help you getting started.

John B-PER
lives O
in O
New B-LOC
York I-LOC
. O

This O
is O
another O
sentence

Once you have produced your data files, change the parameters in config.py like

# dataset
dev_filename = "data/coNLL/eng/eng.testa.iob"
test_filename = "data/coNLL/eng/eng.testb.iob"
train_filename = "data/coNLL/eng/eng.train.iob"

License

This project is licensed under the terms of the apache 2.0 license (as Tensorflow and derivatives). If used for research, citation would be appreciated.

Core symbols most depended-on inside this repo

update
called by 5
model/general_utils.py
load_vocab
called by 4
model/data_utils.py
_pad_sequences
called by 4
model/data_utils.py
pad_sequences
called by 4
model/data_utils.py
write_vocab
called by 3
model/data_utils.py
get_processing_word
called by 3
model/data_utils.py
add
called by 3
model/general_utils.py
load
called by 2
model/config.py

Shape

Method 31
Function 20
Class 6

Languages

Python100%

Modules by API surface

model/data_utils.py20 symbols
model/ner_model.py13 symbols
model/base_model.py11 symbols
model/general_utils.py5 symbols
model/config.py3 symbols
evaluate.py3 symbols
train.py1 symbols
build_data.py1 symbols

Dependencies from manifests, versioned

tensorflow1.0 · 1×

For agents

$ claude mcp add sequence_tagging \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact