MCPcopy Index your code
hub / github.com/galaxyproject/galaxy

github.com/galaxyproject/galaxy @v26.0.1 sqlite

repository ↗ · DeepWiki ↗ · release v26.0.1 ↗
36,766 symbols 160,589 edges 3,262 files 8,769 documented · 24%

Extension points exported contracts — how you extend this code

ProgressUiBase (Interface)
* Shared UI contract for progress indicators (files & batches)
client/src/components/Panels/Upload/uploadProgressUi.ts
CustomMatchers (Interface)
(no doc)
client/types/vitest-setup.d.ts
CustomMatchers (Interface)
(no doc)
client/tests/vitest/matchers.d.ts
RepositoryGridItem (Interface)
(no doc)
lib/tool_shed/webapp/frontend/src/components/RepositoriesGridInterface.ts
GalaxyApiOptions (Interface)
(no doc)
client-api/src/client.ts
BaseCardElement (Interface)
Base properties for all card elements
client/src/components/Common/GCard.types.ts
Assertion (Interface)
(no doc)
client/types/vitest-setup.d.ts
Assertion (Interface)
(no doc)
client/tests/vitest/matchers.d.ts

Core symbols most depended-on inside this repo

append
called by 3094
client/src/components/Workflow/Editor/modules/collectionTypeDescription.ts
find
called by 1569
lib/galaxy/util/__init__.py
split
called by 1204
lib/galaxy/datatypes/data.py
json
called by 1186
lib/galaxy_test/base/populators.py
get
called by 1138
lib/galaxy/util/bunch.py
startswith
called by 877
lib/galaxy/datatypes/sniff.py
get
called by 764
lib/galaxy/webapps/galaxy/api/__init__.py
get
called by 720
lib/galaxy/tool_util/parser/xml.py

Shape

Method 21,396
Function 8,408
Class 5,898
Route 605
Interface 458
Enum 1

Languages

Python91%
TypeScript9%

Modules by API surface

lib/galaxy/model/__init__.py980 symbols
lib/galaxy_test/base/populators.py506 symbols
lib/galaxy/datatypes/binary.py405 symbols
lib/galaxy_test/api/test_workflows.py392 symbols
lib/galaxy/selenium/navigates_galaxy.py346 symbols
lib/galaxy/tools/__init__.py282 symbols
lib/galaxy/schema/schema.py273 symbols
lib/galaxy_test/api/test_tools.py228 symbols
lib/galaxy/tool_util_models/parameters.py208 symbols
lib/tool_shed/test/base/twilltestcase.py200 symbols
lib/galaxy/tools/parameters/basic.py197 symbols
lib/galaxy/model/store/__init__.py186 symbols

Dependencies from manifests, versioned

@citation-js/core0.7.1 · 1×
@citation-js/plugin-bibtex0.7.2 · 1×
@citation-js/plugin-csl0.7.2 · 1×
@floating-ui/dom1.7.0 · 1×
@fontsource/atkinson-hyperlegible5.0.17 · 1×
@fortawesome/fontawesome-free5.15.4 · 1×
@fortawesome/fontawesome-svg-core6.2.1 · 1×
@fortawesome/free-brands-svg-icons5.15.4 · 1×
@fortawesome/free-regular-svg-icons5.15.4 · 1×
@fortawesome/free-solid-svg-icons5.15.4 · 1×
@fortawesome/vue-fontawesome2.0.9 · 1×
@galaxyproject/galaxy-client26.0.1 · 1×

Datastores touched

(mysql)Database · 1 repos
mydatabaseDatabase · 1 repos
galaxy_testDatabase · 1 repos
mydatabaseDatabase · 1 repos
postgresDatabase · 1 repos

For agents

$ claude mcp add galaxy \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact