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github.com/earmingol/scCellFie @v0.6.0

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repository ↗ · DeepWiki ↗ · release v0.6.0 ↗ · + Follow

623 symbols 2,901 edges 107 files 273 documented · 44%

What it actually does AI analysis from the code graph — generated when you open this

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Core symbols most depended-on inside this repo

create_controlled_adata

called by 70

sccellfie/datasets/toy_inputs.py

create_controlled_adata_with_spatial

called by 44

sccellfie/datasets/toy_inputs.py

create_radial_plot

called by 36

sccellfie/plotting/radial_plot.py

create_random_adata

called by 36

sccellfie/datasets/toy_inputs.py

plot_segmentation

called by 29

sccellfie/plotting/segmentation.py

update

called by 27

sccellfie/expression/thresholds.py

get_sccellfie_dataset_threshold

called by 23

sccellfie/expression/thresholds.py

add_complexes_to_adata

called by 21

sccellfie/preprocessing/complexes.py

Shape

Function 607

Method 11

Class 3

Route 2

Languages

Python100%

Modules by API surface

sccellfie/preprocessing/tests/test_adata_utils.py34 symbols

sccellfie/preprocessing/tests/test_complexes.py29 symbols

sccellfie/plotting/tests/test_segmentation.py29 symbols

sccellfie/expression/tests/test_threshold.py29 symbols

sccellfie/stats/tests/test_ablation.py28 symbols

sccellfie/plotting/tests/test_radial_plot.py28 symbols

sccellfie/expression/tests/test_aggregation.py22 symbols

sccellfie/external/tests/test_tf_idf.py20 symbols

sccellfie/reports/tests/test_summary.py18 symbols

sccellfie/preprocessing/tests/test_matrix_utils.py17 symbols

sccellfie/io/tests/test_visium.py17 symbols

sccellfie/expression/thresholds.py17 symbols

For agents

$ claude mcp add scCellFie \
  -- python -m otcore.mcp_server <graph>

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