| 338 | } |
| 339 | |
| 340 | void cDeme::ProcessUpdate(cAvidaContext& ctx) |
| 341 | { |
| 342 | // test deme predicate |
| 343 | for (int i = 0; i < deme_pred_list.GetSize(); i++) { |
| 344 | if (deme_pred_list[i]->GetName() == "cDemeResourceThreshold") { |
| 345 | (*deme_pred_list[i])(ctx, &deme_resource_count); |
| 346 | } |
| 347 | } |
| 348 | |
| 349 | energyUsage.Clear(); |
| 350 | |
| 351 | if(IsEmpty()) { // deme is not processed if no organisms are present |
| 352 | total_energy_testament = 0.0; |
| 353 | return; |
| 354 | } |
| 355 | |
| 356 | if (m_world->GetConfig().ENERGY_ENABLED.Get()) { |
| 357 | for(int i = 0; i < GetSize(); i++) { |
| 358 | cPopulationCell& cell = GetCell(i); |
| 359 | if(cell.IsOccupied()) { |
| 360 | energyUsage.Add(cell.GetOrganism()->GetPhenotype().GetEnergyUsageRatio()); |
| 361 | } |
| 362 | } |
| 363 | } |
| 364 | |
| 365 | for(int i = 0; i < cell_events.GetSize(); i++) { |
| 366 | cDemeCellEvent& event = cell_events[i]; |
| 367 | |
| 368 | if(event.IsActive() && event.GetDelay() < _age && _age <= event.GetDelay()+event.GetDuration()) { |
| 369 | //remove energy from cells (should be done with outflow, but this will work for now) |
| 370 | int eventCell = event.GetNextEventCellID(); |
| 371 | cResource* res = m_world->GetEnvironment().GetResourceLib().GetResource("CELL_ENERGY"); |
| 372 | |
| 373 | while(eventCell != -1) { |
| 374 | cPopulationCell& cell = m_world->GetPopulation().GetCell(GetCellID(eventCell)); |
| 375 | if(event.GetEventID() == cell.GetCellData()){ |
| 376 | if(cell.IsOccupied()) { |
| 377 | // remove energy from organism |
| 378 | cPhenotype& orgPhenotype = cell.GetOrganism()->GetPhenotype(); |
| 379 | orgPhenotype.ReduceEnergy(orgPhenotype.GetStoredEnergy()*m_world->GetConfig().ATTACK_DECAY_RATE.Get()); |
| 380 | } |
| 381 | //remove energy from cell... organism might not takeup all of a cell's energy |
| 382 | Apto::Array<double> cell_resources = deme_resource_count.GetCellResources(eventCell, ctx); // uses global cell_id; is this a problem |
| 383 | cell_resources[res->GetID()] *= m_world->GetConfig().ATTACK_DECAY_RATE.Get(); |
| 384 | deme_resource_count.ModifyCell(ctx, cell_resources, eventCell); |
| 385 | } |
| 386 | eventCell = event.GetNextEventCellID(); |
| 387 | } |
| 388 | } |
| 389 | |
| 390 | |
| 391 | |
| 392 | if(!event.IsActive() && event.GetDelay() == _age) { |
| 393 | eventsTotal++; |
| 394 | event.ActivateEvent(); //start event |
| 395 | int eventCell = event.GetNextEventCellID(); |
| 396 | while(eventCell != -1) { |
| 397 | // place event ID in cells' data |
no test coverage detected