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github.com/deshaw/versioned-hdf5
/ functions
Functions
917 in github.com/deshaw/versioned-hdf5
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Functions
917
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Types & classes
85
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Endpoints
6
Method
ndim
(self)
versioned_hdf5/typing_.py:36
Method
ndim
(self)
versioned_hdf5/typing_.py:57
Method
ndim
(self)
versioned_hdf5/staged_changes.py:315
Method
ndim
(self)
versioned_hdf5/wrappers.py:957
Method
ndim
(self)
tests/test_typing.py:29
Method
operator()
versioned_hdf5/_commit_hash.hpp:41
Method
operator()
versioned_hdf5/_commit_hash.hpp:63
Method
operator==
versioned_hdf5/_commit_hash.hpp:35
Method
operator==
versioned_hdf5/_commit_hash.hpp:57
Method
parent
(self)
versioned_hdf5/wrappers.py:227
Method
parent
(self)
versioned_hdf5/wrappers.py:716
Method
peakmem_baseline
Measure RAM usage when doing nothing
benchmarks/replay.py:70
Function
premade_group
(h5file)
tests/test_wrappers.py:20
Function
pytest_collection_modifyitems
(items)
tests/conftest.py:20
Function
pytest_report_header
(config)
conftest.py:1
Function
read_many_slices_params
Return the parameters for read_many_slices() for all chunks of the selection. Returns ------- Tuple of two 2D arrays, (slices
versioned_hdf5/subchunk_map.py:86
Method
read_many_slices_params
( self, )
versioned_hdf5/subchunk_map.py:508
Method
resize
Resize the dataset, or the specified axis. The rank of the dataset cannot be changed. "size" should be a shape tuple, or if an axis
versioned_hdf5/wrappers.py:719
Method
resize
(self, size, axis=None)
versioned_hdf5/wrappers.py:1044
Method
save
(self, summary, filename)
analysis/performance_tests.py:162
Method
save
(self, summary, filename)
analysis/performance_tests.py:175
Method
save
(self, summary, filename)
analysis/performance_tests.py:188
Method
save
(self, summary, filename)
analysis/performance_tests.py:201
Method
save
(self, summary, filename)
analysis/performance_tests.py:214
Method
set_extent
(self, shape)
versioned_hdf5/wrappers.py:1298
Method
setup
(self, chunk_size, edge)
benchmarks/hash.py:28
Method
setup
(self, layout, chunk_size)
benchmarks/hash.py:90
Method
setup
(self, dtype, max_nchars, chunk_size)
benchmarks/hash.py:140
Method
setup
(self, dtype, nbytes)
benchmarks/hashtable.py:17
Method
setup
(self, chunk_size)
benchmarks/read_many_slices.py:70
Method
setup
(self, chunk_size, layout, fast)
benchmarks/read_many_slices.py:138
Method
setup
(self, case)
benchmarks/replay.py:78
Method
setup
(self, case)
benchmarks/replay.py:92
Method
setup
(self, case)
benchmarks/replay.py:118
Method
setup
(self)
benchmarks/datetime.py:9
Method
setup
(self, *args, **kwargs)
benchmarks/common.py:26
Method
setup
(self, case: str, chunk_size: str)
benchmarks/staged_changes.py:279
Method
setup
(self, case: str, chunk_size: str)
benchmarks/staged_changes.py:297
Method
setup
(self, resize: str, state: str, chunk_size: str)
benchmarks/staged_changes.py:320
Method
setup
(self, as_base_slabs: str, chunk_size: str)
benchmarks/staged_changes.py:344
Method
setup
(self, state: str, chunk_size: str)
benchmarks/staged_changes.py:365
Method
setup
(self, state: str, chunk_size: str)
benchmarks/staged_changes.py:386
Method
setup
(self, scenario: str, chunk_size: str)
benchmarks/staged_changes.py:404
Method
setup
(self, scenario: str, chunk_size: str)
benchmarks/staged_changes.py:429
Method
setup
(self, n)
benchmarks/delete_versions.py:12
Method
setup
(self, how)
benchmarks/chunk_guessing.py:33
Method
setup
(self, kind)
benchmarks/wrappers.py:15
Method
setup
(self, density, library)
benchmarks/wrappers.py:93
Method
setup
(self, library, dtype, max_nchars)
benchmarks/strings.py:19
Method
setup_method
(self)
tests/test_staged_changes.py:674
Method
shape
(self)
versioned_hdf5/h5py_compat.py:46
Method
shape
(self)
versioned_hdf5/typing_.py:30
Method
shape
(self)
versioned_hdf5/typing_.py:51
Method
shape
(self)
versioned_hdf5/wrappers.py:700
Method
shape
(self)
versioned_hdf5/wrappers.py:1028
Method
shape
(self)
versioned_hdf5/wrappers.py:1099
Method
shape
(self)
versioned_hdf5/wrappers.py:1302
Method
shape
(self)
tests/test_typing.py:21
Method
size
(self)
versioned_hdf5/h5py_compat.py:50
Method
size
(self)
versioned_hdf5/typing_.py:33
Method
size
(self)
versioned_hdf5/typing_.py:54
Method
size
(self)
versioned_hdf5/staged_changes.py:319
Method
size
(self)
versioned_hdf5/wrappers.py:704
Method
size
(self)
versioned_hdf5/wrappers.py:934
Method
size
(self)
tests/test_typing.py:25
Function
staged_array_st
( draw, max_ndim: int = 4, max_size: int = 20, max_actions: int = 6 )
tests/test_staged_changes.py:35
Method
staged_changes
(self)
versioned_hdf5/wrappers.py:643
Method
staged_hash_tables
(self)
versioned_hdf5/staged_changes.py:366
Method
staged_slabs
(self)
versioned_hdf5/staged_changes.py:362
Method
staged_slabs_start
First index of staged slabs inside self.slabs
versioned_hdf5/staged_changes.py:349
Method
teardown
(self, *args, **kwargs)
benchmarks/common.py:57
Method
teardown
(self, how)
benchmarks/chunk_guessing.py:50
Method
teardown
(self, kind)
benchmarks/wrappers.py:82
Method
teardown
(self, library, dtype, max_nchars)
benchmarks/strings.py:88
Function
test_InMemoryArrayDataset
(h5file)
tests/test_wrappers.py:25
Function
test_InMemoryArrayDataset_bare_object_dtype_fillvalue
Test that an InMemoryArrayDataset built from an array of bare object dtype (stripped of the h5py string metadata) defaults its fillvalue to b"
tests/test_wrappers.py:480
Function
test_InMemoryArrayDataset_chunks
(vfile)
tests/test_api.py:1666
Function
test_InMemoryArrayDataset_dtype
(vfile, kwargs)
tests/test_wrappers.py:110
Function
test_InMemoryArrayDataset_enlarge
(h5file)
tests/test_wrappers.py:57
Function
test_InMemoryArrayDataset_enlarge_retains_attrs
(vfile)
tests/test_wrappers.py:76
Function
test_InMemoryArrayDataset_resize_multidimension
(oldshape, newshape, h5file)
tests/test_wrappers.py:162
Function
test_InMemoryArrayDataset_shrink
(h5file)
tests/test_wrappers.py:85
Function
test_InMemorySparseDataset
(h5file)
tests/test_wrappers.py:119
Function
test_InMemorySparseDataset_getitem
(h5file)
tests/test_wrappers.py:137
Method
test_array
__array__ changes chunk dtype upon first access.
tests/test_staged_changes.py:695
Function
test_array_protocol
()
tests/test_typing.py:57
Function
test_array_protocol_from_array
Test that from_array() accepts anything that implements ArrayProtocol and that it does not coerce it to a numpy array.
tests/test_staged_changes.py:221
Function
test_array_protocol_from_slabs
Test that the base slabs can be anything that implements ArrayProtocol and that they are not coerced to a numpy array.
tests/test_staged_changes.py:239
Function
test_array_protocol_h5_astypeview
Test that h5py AsTypeView is an ArrayProtocol
tests/test_typing.py:83
Function
test_array_protocol_h5_astypeview_compat
Test that h5py_astype() returns an ArrayProtocol, also on older h5py versions. TODO delete this test when dropping support for h5py <3.13.
tests/test_typing.py:92
Function
test_array_protocol_h5_dataset
Test that h5py.Dataset is a ArrayProtocol
tests/test_typing.py:75
Function
test_array_protocol_rawdataview
RawDataView conforms to the writeable MutableArrayProtocol, so that it satisfies the return type of StagedChangesArray.commit()'s ``empty`` callba
tests/test_typing.py:109
Function
test_array_protocol_setitem
Test that the value of __setitem__ can be anything that implements ArrayProtocol
tests/test_staged_changes.py:211
Function
test_asarray
()
tests/test_tools.py:15
Function
test_asarray
()
tests/test_staged_changes.py:298
Function
test_asarray_np2_strings
Test workaround to bug when converting from object array of bytes to NpyStrings This issue affected NumPy >=2.0.0,<2.2.3 https://github.com/nu
tests/test_tools.py:72
Function
test_astype
()
tests/test_staged_changes.py:531
Function
test_astype_base_slabs
()
tests/test_staged_changes.py:580
Function
test_astype_dense
(vfile, dtype)
tests/test_wrappers.py:267
Function
test_astype_object_to_str_keeps_hashes
In object string <-> StringDType conversions the data doesn't change, so the hashes of the swapped base slabs are not invalidated.
tests/test_staged_changes.py:647
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