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Functions917 in github.com/deshaw/versioned-hdf5

Methodndim
(self)
versioned_hdf5/typing_.py:36
Methodndim
(self)
versioned_hdf5/typing_.py:57
Methodndim
(self)
versioned_hdf5/staged_changes.py:315
Methodndim
(self)
versioned_hdf5/wrappers.py:957
Methodndim
(self)
tests/test_typing.py:29
Methodoperator()
versioned_hdf5/_commit_hash.hpp:41
Methodoperator()
versioned_hdf5/_commit_hash.hpp:63
Methodoperator==
versioned_hdf5/_commit_hash.hpp:35
Methodoperator==
versioned_hdf5/_commit_hash.hpp:57
Methodparent
(self)
versioned_hdf5/wrappers.py:227
Methodparent
(self)
versioned_hdf5/wrappers.py:716
Methodpeakmem_baseline
Measure RAM usage when doing nothing
benchmarks/replay.py:70
Functionpremade_group
(h5file)
tests/test_wrappers.py:20
Functionpytest_collection_modifyitems
(items)
tests/conftest.py:20
Functionpytest_report_header
(config)
conftest.py:1
Functionread_many_slices_params
Return the parameters for read_many_slices() for all chunks of the selection. Returns ------- Tuple of two 2D arrays, (slices
versioned_hdf5/subchunk_map.py:86
Methodread_many_slices_params
( self, )
versioned_hdf5/subchunk_map.py:508
Methodresize
Resize the dataset, or the specified axis. The rank of the dataset cannot be changed. "size" should be a shape tuple, or if an axis
versioned_hdf5/wrappers.py:719
Methodresize
(self, size, axis=None)
versioned_hdf5/wrappers.py:1044
Methodsave
(self, summary, filename)
analysis/performance_tests.py:162
Methodsave
(self, summary, filename)
analysis/performance_tests.py:175
Methodsave
(self, summary, filename)
analysis/performance_tests.py:188
Methodsave
(self, summary, filename)
analysis/performance_tests.py:201
Methodsave
(self, summary, filename)
analysis/performance_tests.py:214
Methodset_extent
(self, shape)
versioned_hdf5/wrappers.py:1298
Methodsetup
(self, chunk_size, edge)
benchmarks/hash.py:28
Methodsetup
(self, layout, chunk_size)
benchmarks/hash.py:90
Methodsetup
(self, dtype, max_nchars, chunk_size)
benchmarks/hash.py:140
Methodsetup
(self, dtype, nbytes)
benchmarks/hashtable.py:17
Methodsetup
(self, chunk_size)
benchmarks/read_many_slices.py:70
Methodsetup
(self, chunk_size, layout, fast)
benchmarks/read_many_slices.py:138
Methodsetup
(self, case)
benchmarks/replay.py:78
Methodsetup
(self, case)
benchmarks/replay.py:92
Methodsetup
(self, case)
benchmarks/replay.py:118
Methodsetup
(self)
benchmarks/datetime.py:9
Methodsetup
(self, *args, **kwargs)
benchmarks/common.py:26
Methodsetup
(self, case: str, chunk_size: str)
benchmarks/staged_changes.py:279
Methodsetup
(self, case: str, chunk_size: str)
benchmarks/staged_changes.py:297
Methodsetup
(self, resize: str, state: str, chunk_size: str)
benchmarks/staged_changes.py:320
Methodsetup
(self, as_base_slabs: str, chunk_size: str)
benchmarks/staged_changes.py:344
Methodsetup
(self, state: str, chunk_size: str)
benchmarks/staged_changes.py:365
Methodsetup
(self, state: str, chunk_size: str)
benchmarks/staged_changes.py:386
Methodsetup
(self, scenario: str, chunk_size: str)
benchmarks/staged_changes.py:404
Methodsetup
(self, scenario: str, chunk_size: str)
benchmarks/staged_changes.py:429
Methodsetup
(self, n)
benchmarks/delete_versions.py:12
Methodsetup
(self, how)
benchmarks/chunk_guessing.py:33
Methodsetup
(self, kind)
benchmarks/wrappers.py:15
Methodsetup
(self, density, library)
benchmarks/wrappers.py:93
Methodsetup
(self, library, dtype, max_nchars)
benchmarks/strings.py:19
Methodsetup_method
(self)
tests/test_staged_changes.py:674
Methodshape
(self)
versioned_hdf5/h5py_compat.py:46
Methodshape
(self)
versioned_hdf5/typing_.py:30
Methodshape
(self)
versioned_hdf5/typing_.py:51
Methodshape
(self)
versioned_hdf5/wrappers.py:700
Methodshape
(self)
versioned_hdf5/wrappers.py:1028
Methodshape
(self)
versioned_hdf5/wrappers.py:1099
Methodshape
(self)
versioned_hdf5/wrappers.py:1302
Methodshape
(self)
tests/test_typing.py:21
Methodsize
(self)
versioned_hdf5/h5py_compat.py:50
Methodsize
(self)
versioned_hdf5/typing_.py:33
Methodsize
(self)
versioned_hdf5/typing_.py:54
Methodsize
(self)
versioned_hdf5/staged_changes.py:319
Methodsize
(self)
versioned_hdf5/wrappers.py:704
Methodsize
(self)
versioned_hdf5/wrappers.py:934
Methodsize
(self)
tests/test_typing.py:25
Functionstaged_array_st
( draw, max_ndim: int = 4, max_size: int = 20, max_actions: int = 6 )
tests/test_staged_changes.py:35
Methodstaged_changes
(self)
versioned_hdf5/wrappers.py:643
Methodstaged_hash_tables
(self)
versioned_hdf5/staged_changes.py:366
Methodstaged_slabs
(self)
versioned_hdf5/staged_changes.py:362
Methodstaged_slabs_start
First index of staged slabs inside self.slabs
versioned_hdf5/staged_changes.py:349
Methodteardown
(self, *args, **kwargs)
benchmarks/common.py:57
Methodteardown
(self, how)
benchmarks/chunk_guessing.py:50
Methodteardown
(self, kind)
benchmarks/wrappers.py:82
Methodteardown
(self, library, dtype, max_nchars)
benchmarks/strings.py:88
Functiontest_InMemoryArrayDataset
(h5file)
tests/test_wrappers.py:25
Functiontest_InMemoryArrayDataset_bare_object_dtype_fillvalue
Test that an InMemoryArrayDataset built from an array of bare object dtype (stripped of the h5py string metadata) defaults its fillvalue to b"
tests/test_wrappers.py:480
Functiontest_InMemoryArrayDataset_chunks
(vfile)
tests/test_api.py:1666
Functiontest_InMemoryArrayDataset_dtype
(vfile, kwargs)
tests/test_wrappers.py:110
Functiontest_InMemoryArrayDataset_enlarge
(h5file)
tests/test_wrappers.py:57
Functiontest_InMemoryArrayDataset_enlarge_retains_attrs
(vfile)
tests/test_wrappers.py:76
Functiontest_InMemoryArrayDataset_resize_multidimension
(oldshape, newshape, h5file)
tests/test_wrappers.py:162
Functiontest_InMemoryArrayDataset_shrink
(h5file)
tests/test_wrappers.py:85
Functiontest_InMemorySparseDataset
(h5file)
tests/test_wrappers.py:119
Functiontest_InMemorySparseDataset_getitem
(h5file)
tests/test_wrappers.py:137
Methodtest_array
__array__ changes chunk dtype upon first access.
tests/test_staged_changes.py:695
Functiontest_array_protocol
()
tests/test_typing.py:57
Functiontest_array_protocol_from_array
Test that from_array() accepts anything that implements ArrayProtocol and that it does not coerce it to a numpy array.
tests/test_staged_changes.py:221
Functiontest_array_protocol_from_slabs
Test that the base slabs can be anything that implements ArrayProtocol and that they are not coerced to a numpy array.
tests/test_staged_changes.py:239
Functiontest_array_protocol_h5_astypeview
Test that h5py AsTypeView is an ArrayProtocol
tests/test_typing.py:83
Functiontest_array_protocol_h5_astypeview_compat
Test that h5py_astype() returns an ArrayProtocol, also on older h5py versions. TODO delete this test when dropping support for h5py <3.13.
tests/test_typing.py:92
Functiontest_array_protocol_h5_dataset
Test that h5py.Dataset is a ArrayProtocol
tests/test_typing.py:75
Functiontest_array_protocol_rawdataview
RawDataView conforms to the writeable MutableArrayProtocol, so that it satisfies the return type of StagedChangesArray.commit()'s ``empty`` callba
tests/test_typing.py:109
Functiontest_array_protocol_setitem
Test that the value of __setitem__ can be anything that implements ArrayProtocol
tests/test_staged_changes.py:211
Functiontest_asarray
()
tests/test_tools.py:15
Functiontest_asarray
()
tests/test_staged_changes.py:298
Functiontest_asarray_np2_strings
Test workaround to bug when converting from object array of bytes to NpyStrings This issue affected NumPy >=2.0.0,<2.2.3 https://github.com/nu
tests/test_tools.py:72
Functiontest_astype
()
tests/test_staged_changes.py:531
Functiontest_astype_base_slabs
()
tests/test_staged_changes.py:580
Functiontest_astype_dense
(vfile, dtype)
tests/test_wrappers.py:267
Functiontest_astype_object_to_str_keeps_hashes
In object string <-> StringDType conversions the data doesn't change, so the hashes of the swapped base slabs are not invalidated.
tests/test_staged_changes.py:647
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