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Functions506 in github.com/dek924/PerX2CT

Method__init__
(self, chn_in, chn_out=1, use_dropout=False)
taming/modules/losses/lpips.py:69
Method__init__
(self, requires_grad=False, pretrained=True)
taming/modules/losses/lpips.py:77
Method__init__
(self, codebook_weight=1.)
taming/modules/losses/segmentation.py:12
Method__init__
(self, size=(3,256,256))
data_preprocessing/4_ct_dataset_prepare.py:21
Method__len__
(self)
main.py:141
Method__len__
(self)
x2ct_nerf/data/LIDC.py:9
Method__len__
(self)
x2ct_nerf/data/base.py:37
Method_init_weights
(self, module)
taming/modules/transformer/mingpt.py:151
Method_init_weights
(self, module)
taming/modules/transformer/mingpt.py:251
Method_test_dataloader
(self)
main.py:187
Method_testtube
(self, pl_module, images, batch_idx, split)
main.py:335
Method_train_dataloader
(self)
main.py:178
Method_train_dataloader
(self)
main.py:201
Method_val_dataloader
(self)
main.py:182
Method_wandb
(self, pl_module, images, batch_idx, split)
main.py:299
Functionadd_3D_image
:param tensor: (c,h,w) :param max_image: :return:
utils/logger/TestLogger.py:5
Functionbedstriping
(ct_scan, ct_mask)
data_preprocessing/ctxray_utils.py:45
FunctionbuildTrainA
(raw_root_path, save_root_path)
data_preprocessing/ctxray_utils.py:50
FunctionbuildTrainB
(raw_root_path, save_root_path)
data_preprocessing/ctxray_utils.py:69
Functioncalculate_metric_per_axis
(target, output, perceptual_loss_fn, ct_min_max)
main_test_zoom.py:109
Functioncalculate_metric_per_axis
(target, output, perceptual_loss_fn, ct_min_max)
main_test.py:106
Functionchange_config_file_to_fixed_test
(config, batch=3)
main_test_zoom.py:76
Functionchange_config_file_to_fixed_test
(config, batch=3)
main_test.py:73
Methodconfigure_optimizers
(self)
x2ct_nerf/models/base.py:118
Methodconfigure_optimizers
(self)
x2ct_nerf/models/aegan.py:165
Functionconvert2hu
(path)
data_preprocessing/ctxray_utils.py:101
Functioncount_params
(model)
taming/modules/util.py:5
Functioncreate_world2cam_matrix
Takes in the direction the camera is pointing and the camera origin and returns a world2cam matrix.
x2ct_nerf/modules/volume_rendering.py:307
Functioncustom_collate
r"""source: pytorch 1.9.0, only one modification to original code
taming/data/utils.py:124
Methoddecode
(self, c)
taming/modules/misc/coord.py:27
Methoddecode_code
(self, code_b)
x2ct_nerf/models/aegan.py:84
Functiondivein
(*args, **kwargs)
main.py:627
Functiondownload_urls
(urls, target_dir)
taming/data/utils.py:88
Methodencode
NS : number of source src_images : NS x B x C x H x W src_camposes : (NS x B x 2), 2 is pitch and yaw or None render_
x2ct_nerf/modules/inr/model_global.py:52
Methodencode
(self, *args, **kwargs)
taming/modules/util.py:99
Methodencode
(self, c)
taming/modules/util.py:110
Methodencode
(self, x)
taming/modules/util.py:124
Methodencode
fake vqmodel interface
taming/modules/misc/coord.py:11
Methodencode_to_prequant
(self, x)
x2ct_nerf/models/zoom_aegan.py:88
Methodencode_to_prequant
(self, x)
x2ct_nerf/models/aegan.py:273
Methodencode_to_prequant
(self, x)
x2ct_nerf/models/aegan.py:591
Functionfancy_integration
Performs NeRF volumetric rendering.
x2ct_nerf/modules/volume_rendering.py:112
Methodforward
inputs : from dataloader, must have image_key full_render_partial_grad : rendering full resolution but gradiendt is calculated partia
x2ct_nerf/modules/INREncoderZoomAxisInAlign.py:245
Methodforward
inputs : from dataloader, must have image_key full_render_partial_grad : rendering full resolution but gradiendt is calculated partia
x2ct_nerf/modules/INRGLEncoderZoomAxisInAlign.py:280
Methodforward
(self, input)
x2ct_nerf/modules/nerf/model.py:11
Methodforward
(self, x)
x2ct_nerf/modules/nerf/model.py:29
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:44
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:59
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:78
Methodforward
(self, x, temb, skipfeature=None)
x2ct_nerf/modules/diffusionmodules/model.py:127
Methodforward
(self, x, temb, skipfeature=None, skiptype='nonlinear_sum')
x2ct_nerf/modules/diffusionmodules/model.py:196
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:256
Methodforward
(self, x, t=None)
x2ct_nerf/modules/diffusionmodules/model.py:382
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:494
Methodforward
(self, z)
x2ct_nerf/modules/diffusionmodules/model.py:528
Methodforward
(self, z, temb=None)
x2ct_nerf/modules/diffusionmodules/model.py:603
Methodforward
(self, z, temb=None)
x2ct_nerf/modules/diffusionmodules/model.py:725
Methodforward
(self, z, skipfeatures, temb=None)
x2ct_nerf/modules/diffusionmodules/model.py:860
Methodforward
(self, z, skipfeatures, temb=None)
x2ct_nerf/modules/diffusionmodules/model.py:1019
Methodforward
(self, x, z)
x2ct_nerf/modules/diffusionmodules/model.py:1192
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:1264
Methodforward
(self, x)
x2ct_nerf/modules/diffusionmodules/model.py:1311
Methodforward
(self, x)
x2ct_nerf/modules/discriminator/base.py:11
Methodforward
(self, input)
x2ct_nerf/modules/discriminator/base.py:21
Methodforward
Args: input_tensor: shape(batch, channel, x_dim, y_dim)
x2ct_nerf/modules/discriminator/base.py:40
Methodforward
(self, x)
x2ct_nerf/modules/discriminator/base.py:83
Methodforward
(self, identity)
x2ct_nerf/modules/discriminator/base.py:103
Methodforward
(self, input, alpha)
x2ct_nerf/modules/discriminator/model.py:35
Methodforward
output : dictionary type
x2ct_nerf/modules/inr/model_global.py:34
Methodforward
output : dictionary type
x2ct_nerf/modules/inr/model.py:36
Methodforward
(self, inputs, reconstructions, split="train")
x2ct_nerf/modules/losses/evaluation.py:15
Methodforward
(self, codebook_loss, inputs, reconstructions, optimizer_idx, global_step, last_layer=None, co
x2ct_nerf/modules/losses/vqperceptual.py:76
Methodforward
(self, codebook_loss, inputs, reconstructions, optimizer_idx, global_step, last_layer=None, co
x2ct_nerf/modules/losses/vqperceptual.py:185
Methodforward
(self, codebook_loss=None, inputs=None, reconstructions=None, optimizer_idx=None, global_step=
x2ct_nerf/modules/losses/perceptual.py:70
Methodforward
(self, input, target)
x2ct_nerf/modules/losses/lpips.py:41
Methodforward
(self, inp)
x2ct_nerf/modules/losses/lpips.py:63
Methodforward
(self, X)
x2ct_nerf/modules/losses/lpips.py:100
Methodforward
For extracting ResNet's features. :param x image (B, C, H, W) :return latent (B, latent_dim)
x2ct_nerf/modules/image_encoder/resnet.py:96
Methodforward
For extracting ResNet's features. :param x image (B, C, H, W) :return latent (B, latent_dim)
x2ct_nerf/modules/image_encoder/resnet.py:138
Methodforward
(self, x)
x2ct_nerf/modules/image_encoder/resnet.py:206
Methodforward
(self, x)
x2ct_nerf/modules/image_encoder/resnet.py:263
Methodforward
For extracting ResNet's features. :param x image (B, C, H, W) :return latent (B, latent_dim)
x2ct_nerf/modules/image_encoder/resnet_global.py:78
Methodforward
(self, input)
x2ct_nerf/models/zoom_aegan.py:69
Methodforward
(self, input)
x2ct_nerf/models/base.py:60
Methodforward
(self, input, gt_ct=None, **kwargs)
x2ct_nerf/models/base.py:187
Methodforward
(self, input)
x2ct_nerf/models/aegan.py:87
Methodforward
(self, input)
x2ct_nerf/models/aegan.py:262
Methodforward
(self, input)
x2ct_nerf/models/aegan.py:398
Methodforward
(self, input)
x2ct_nerf/models/aegan.py:579
Methodforward
(self, input)
x2ct_nerf/models/aegan.py:737
Methodforward
(self, input, reverse=False)
taming/modules/util.py:43
Methodforward
(self, x)
taming/modules/diffusionmodules/model.py:49
Methodforward
(self, x)
taming/modules/diffusionmodules/model.py:68
Methodforward
(self, x, temb)
taming/modules/diffusionmodules/model.py:117
Methodforward
(self, x)
taming/modules/diffusionmodules/model.py:168
Methodforward
(self, x, t=None)
taming/modules/diffusionmodules/model.py:295
Methodforward
(self, x)
taming/modules/diffusionmodules/model.py:408
Methodforward
(self, z)
taming/modules/diffusionmodules/model.py:440
Methodforward
(self, z)
taming/modules/diffusionmodules/model.py:513
Methodforward
(self, x, z)
taming/modules/diffusionmodules/model.py:652
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