Method loadFromRepo

annotation/XmlRepository.cpp:98–188

}

bool XmlRepository::loadFromRepo()
{
  if (!_list) {
    return false;
  }

  _list->removeAllAnnotations();
  _list->removeAllGroups();

  pugi::xml_document xml_doc;
  pugi::xml_parse_result tree = xml_doc.load_file(_source.c_str());
  pugi::xml_node root = xml_doc.child("ASAP_Annotations");
  if (root.empty()) {
    root = xml_doc.root();
  }
  std::map<std::string, std::shared_ptr<AnnotationGroup> > nameToGroup;
  std::map<std::string, std::string> groupToParent;
  pugi::xml_node groups = root.child("AnnotationGroups");
  for (pugi::xml_node_iterator it = groups.begin(); it != groups.end(); ++it)
  {
    std::shared_ptr<AnnotationGroup> group = std::make_shared<AnnotationGroup>();
    std::string groupName = it->attribute("Name").value();
    group->setName(groupName);
    std::string groupColor = it->attribute("Color").value();
    if (!groupColor.empty()) {
      group->setColor(groupColor);
    }
    std::string parentGroupName = it->attribute("PartOfGroup").value();
    if (parentGroupName != "None") {
      groupToParent[groupName] = parentGroupName;
    }
    nameToGroup[groupName] = group;
    pugi::xml_node groupAttributes = it->child("Attributes");
    for (pugi::xml_node_iterator itAttNode = groupAttributes.begin(); itAttNode != groupAttributes.end(); ++itAttNode) {
      for (pugi::xml_attribute_iterator itAttAtrributes = itAttNode->attributes_begin(); itAttAtrributes != itAttNode->attributes_end(); ++itAttAtrributes) {
        group->setAttribute<std::string>(itAttAtrributes->name(), itAttAtrributes->value());
      }
    }
    _list->addGroup(group);
  }

  // Now add the parent groups to each group
  std::vector<std::shared_ptr<AnnotationGroup> > grps = _list->getGroups();
  for (std::vector<std::shared_ptr<AnnotationGroup> >::iterator it = grps.begin(); it != grps.end(); ++it) {
    if (groupToParent.find((*it)->getName()) != groupToParent.end()) {
      (*it)->setGroup(nameToGroup[groupToParent[(*it)->getName()]]);
    }
  }

  pugi::xml_node annotations = root.child("Annotations");
  for (pugi::xml_node_iterator it = annotations.begin(); it != annotations.end(); ++it)
  {
    std::shared_ptr<Annotation> annotation = std::make_shared<Annotation>();

    annotation->setName(it->attribute("Name").value());
    annotation->setTypeFromString(it->attribute("Type").value());
    std::string annotColor = it->attribute("Color").value();
    if (!annotColor.empty()) {