Method storeFileBundle

src/db/queries.ts:547–578

* Store one file's whole extraction bundle — nodes, edges, unresolved refs, * and the file record — in a SINGLE transaction. The bulk-index path calls * this once per file instead of opening one transaction per table (#1015 * file-order commit discipline is unchanged: callers still invoke i

(bundle: {
    nodes: Node[];
    edges: Edge[];
    refs: UnresolvedReference[];
    file: FileRecord;
  })

   * SELECT that insertEdges() pays is skipped here.
   */
  storeFileBundle(bundle: {
    nodes: Node[];
    edges: Edge[];
    refs: UnresolvedReference[];
    file: FileRecord;
  }): void {
    this.db.transaction(() => {
      this.insertNodes(bundle.nodes);
      if (bundle.edges.length > 0) {
        const rows: unknown[][] = [];
        for (const edge of bundle.edges) {
          rows.push([
            edge.source,
            edge.target,
            edge.kind,
            edge.metadata ? JSON.stringify(edge.metadata) : null,
            edge.line ?? null,
            edge.column ?? null,
            edge.provenance ?? null,
          ]);
        }
        this.runBatched(
          'insertEdges',
          'INSERT OR IGNORE INTO edges (source, target, kind, metadata, line, col, provenance) VALUES ',
          '(?,?,?,?,?,?,?)',
          rows
        );
      }
      if (bundle.refs.length > 0) this.insertUnresolvedRefsBatch(bundle.refs);
      this.upsertFile(bundle.file);
    })();
  }

  /**
   * Collect (segment, name) rows for a name, honouring the same session-dedupe