Function significance

pattern/metrics.py:716–725

Returns the significance for the given test (FISHER, CHI2, LLR).

(*args, **kwargs)

FISHER, CHI2, LLR = "fisher", "chi2", "llr"
def significance(*args, **kwargs):
    """ Returns the significance for the given test (FISHER, CHI2, LLR).
    """
    test = kwargs.pop("test", FISHER)
    if test == FISHER:
        return fisher_exact_test(*args, **kwargs)
    if test == CHI2:
        return pearson_chi_squared_test(*args, **kwargs)[1]
    if test == LLR:
        return pearson_log_likelihood_ratio(*args, **kwargs)[1]

#--- PEARSON'S CHI-SQUARED TEST --------------------------------------------------------------------