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Functions162 in github.com/clinicalml/TabLLM

⨍ Functions 162◇ Types & classes 23
Method__init__
(self, config)
t-few/src/data/dataset_readers.py:485
Method__init__
:param config:
t-few/src/data/dataset_readers.py:506
Method__init__
(self, config, answer_choices)
t-few/src/data/dataset_readers.py:634
Method__init__
(self, config)
t-few/src/data/dataset_readers.py:678
Method__init__
:param config
t-few/src/models/EncoderDecoder.py:19
Method__len__
(self)
t-few/src/data/data_module.py:82
Method__len__
(self)
t-few/src/data/data_module.py:162
Method_sample_few_shot_data
(self, orig_data)
t-few/src/data/dataset_readers.py:262
Functioncollate_fn
(batch)
t-few/src/data/data_module.py:185
Methodcompute_metric
(self, accumulated)
t-few/src/data/dataset_readers.py:215
Methodcompute_metric
(self, accumulated)
t-few/src/data/dataset_readers.py:306
Methodconfigure_optimizers
(self)
t-few/src/models/EncoderDecoder.py:308
Methodcreate_note
(p, p_relevant_entities, p_visits, p_conditions, p_procedures)
helper/note_generator.py:412
Functioncreate_perturbed_income_examples
(examples, output_dir)
create_external_datasets.py:429
Functiondictify
(r, root=True)
query_gpt3.py:109
Methodgenerate_notes
(self, method, **kwargs)
helper/note_generator.py:286
Methodgenerate_notes_all_non_zero_conditions
(self, **kwargs)
helper/note_generator.py:523
Methodgenerate_notes_label_leakage
(self, **kwargs)
helper/note_generator.py:503
Methodgenerate_notes_last_n_visits
Generate note for max_visits last visit entries. Add additional_complaints many complaints per visit.
helper/note_generator.py:602
Methodgenerate_notes_list_n_important_visits_and_conditions_and_procedures
(self, **kwargs)
helper/note_generator.py:300
Methodgenerate_notes_list_permuted_n_important_visits_and_conditions_and_procedures
(self, **kwargs)
helper/note_generator.py:304
Methodgenerate_notes_n_important_conditions
Select the num_concept most important concepts (conditions) and add their respective visit entries.
helper/note_generator.py:550
Methodgenerate_notes_n_important_visits
(self, **kwargs)
helper/note_generator.py:291
Methodgenerate_notes_n_important_visits_and_conditions
(self, **kwargs)
helper/note_generator.py:294
Methodgenerate_notes_n_important_visits_and_conditions_and_procedures
(self, **kwargs)
helper/note_generator.py:297
Methodgenerate_notes_permuted_n_important_visits_and_conditions_and_procedures
(self, **kwargs)
helper/note_generator.py:308
Functionget_dataset_reader
(config)
t-few/src/data/dataset_readers.py:37
Methodget_eval_template
(self)
t-few/src/data/dataset_readers.py:165
Methodget_task_name
(dataset_name, subset_name, template_name)
t-few/src/data/dataset_readers.py:555
Methodget_template
(self, template_idx)
t-few/src/data/dataset_readers.py:230
Methodget_template
(self)
t-few/src/data/dataset_readers.py:613
Methodget_train_template
(self)
t-few/src/data/dataset_readers.py:162
Methodinitialize_default_dict
(d, default)
helper/note_template.py:17
Methodon_before_optimizer_step
(self, optimizer, optimizer_idx)
t-few/src/models/EncoderDecoder.py:366
Methodon_test_start
(self)
t-few/src/models/EncoderDecoder.py:325
Methodon_train_end
(self)
t-few/src/models/EncoderDecoder.py:319
Methodparse_visits_and_temporal
(person)
helper/note_generator.py:701
Methodprepare_data
(self)
t-few/src/data/data_module.py:15
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:242
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:346
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:369
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:382
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:395
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:460
Methodread_orig_dataset
(self, split)
t-few/src/data/dataset_readers.py:488
Methodread_orig_dataset
Read the original dataset :param split: split of data
t-few/src/data/dataset_readers.py:616
Methodread_permuted_concepts
(file_name)
helper/note_generator.py:125
Functionresult_str
(scores)
evaluate_external_dataset.py:445
Functionserialize
(ex)
create_external_datasets.py:158
Methodset_types
(l, c)
helper/note_generator.py:402
Methodsetup
(self, stage)
t-few/src/data/data_module.py:21
Methodsetup
(self, stage)
t-few/src/data/data_module.py:133
Methodtest_dataloader
(self)
t-few/src/data/data_module.py:64
Methodtest_epoch_end
(self, outputs)
t-few/src/models/EncoderDecoder.py:304
Methodtest_step
(self, batch, batch_idx)
t-few/src/models/EncoderDecoder.py:300
Methodtoken_length
(text)
helper/note_generator.py:330
Methodtrain_dataloader
(self)
t-few/src/data/data_module.py:45
Methodtrain_dataloader
(self)
t-few/src/data/data_module.py:144
Methodtraining_step
(self, batch, batch_idx)
t-few/src/models/EncoderDecoder.py:41
Methodval_dataloader
(self)
t-few/src/data/data_module.py:55
Methodvalidation_epoch_end
(self, outputs)
t-few/src/models/EncoderDecoder.py:286
Methodvalidation_step
(self, batch, batch_idx)
t-few/src/models/EncoderDecoder.py:241
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