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Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 1 callersFunctioncal_exact_ug_o
Overlaps.cpp:21420
↓ 1 callersFunctioncal_exz_extension_0_simi
Correct.cpp:15523
↓ 1 callersFunctioncal_exz_extension_1_simi
Correct.cpp:15551
↓ 1 callersFunctioncal_exz_global_simi
Correct.cpp:15495
↓ 1 callersFunctioncal_exz_semi_simi
Correct.cpp:15579
↓ 1 callersFunctioncal_gchain_sc_adv
inter.cpp:6036
↓ 1 callersFunctioncal_graph_ovlp_binning
inter.cpp:22789
↓ 1 callersFunctioncal_integer_match_dis
gfa_ut.cpp:6205
↓ 1 callersFunctioncal_integer_most_dis
gfa_ut.cpp:6242
↓ 1 callersFunctioncal_no_bd_coor
Correct.cpp:20583
↓ 1 callersFunctioncal_npc_err
[s, e) for x
inter.cpp:11099
↓ 1 callersFunctioncal_ov_r
ecovlp.cpp:6385
↓ 1 callersFunctioncal_paired_distance
Correct.cpp:21132
↓ 1 callersFunctioncal_scaf_trans
Overlaps.cpp:23105
↓ 1 callersFunctioncal_sec_ec_multiple
ecovlp.cpp:6188
↓ 1 callersFunctioncal_self_close_tang_flank
Overlaps.cpp:22488
↓ 1 callersFunctioncal_self_close_tang_flank0
Overlaps.cpp:22194
↓ 1 callersFunctioncal_self_close_tang_flank1
Overlaps.cpp:22292
↓ 1 callersFunctioncal_trio_vec
Overlaps.cpp:18236
↓ 1 callersFunctioncal_update_ec_multiple
ecovlp.cpp:6095
↓ 1 callersFunctioncalculate_pair_hap_similarity_advance
Purge_Dups.cpp:2479
↓ 1 callersFunctioncalculate_peak
Overlaps.cpp:29443
↓ 1 callersFunctioncalculate_score
Correct.h:760
↓ 1 callersFunctioncalculate_ug_chaining
anchor.cpp:355
↓ 1 callersFunctioncc_bub_match
inter.cpp:16718
↓ 1 callersFunctionchain_bubble
tovlp.cpp:502
↓ 1 callersFunctionchain_origin_trans_uid_by_purge
Purge_Dups.cpp:5177
↓ 1 callersFunctionchain_origin_trans_uid_c_bubble
Overlaps.cpp:23879
↓ 1 callersFunctionchain_origin_trans_uid_s_bubble
Overlaps.cpp:23817
↓ 1 callersFunctioncheck_chain_indels
Assembly.cpp:1266
↓ 1 callersFunctioncheck_connect_rg
Correct.cpp:19190
↓ 1 callersFunctioncheck_connect_ug
Correct.cpp:19174
↓ 1 callersFunctioncheck_fq_files
CommandLines.cpp:456
↓ 1 callersFunctioncheck_hybrid_connect
debug-hybrid
gfa_ut.cpp:11893
↓ 1 callersFunctioncheck_if_fully_covered
Correct.cpp:6365
↓ 1 callersFunctioncheck_if_no_coverage
Overlaps.cpp:38029
↓ 1 callersFunctioncheck_informative_site
Correct.cpp:8471
↓ 1 callersFunctioncheck_option
CommandLines.cpp:486
↓ 1 callersFunctioncheck_tip
Overlaps.h:715
↓ 1 callersFunctioncheck_trans_rate_gap
inter.cpp:4676
↓ 1 callersFunctioncheck_ulg_to_del
gfa_ut.cpp:9735
↓ 1 callersFunctioncheck_weak_ma_hit
Overlaps.cpp:5655
↓ 1 callersFunctionchimeric_integer_deal
gfa_ut.cpp:7213
↓ 1 callersFunctioncigar_check_dbg
Correct.cpp:14191
↓ 1 callersFunctioncigar_gen_by_chain_adv
Correct.cpp:17279
↓ 1 callersFunctionck_w_err
inter.cpp:6947
↓ 1 callersFunctioncl_trans_gen
inter.cpp:16836
↓ 1 callersFunctionclean_bubble_chain_by_HiC
hic.cpp:9314
↓ 1 callersFunctionclean_bubble_chain_by_hic
hic.cpp:13510
↓ 1 callersFunctionclean_bubbles
hic.cpp:6686
↓ 1 callersFunctionclean_clus_flip_aux
rcut.cpp:2513
↓ 1 callersFunctionclean_contain_g0
inter.cpp:21724
↓ 1 callersFunctionclean_hap
hic.cpp:6210
↓ 1 callersFunctionclean_mz_ovlp
tovlp.cpp:1792
↓ 1 callersFunctionclean_ovlp_by_mc
rcut.cpp:3545
↓ 1 callersFunctionclean_primary_untig_graph
Overlaps.cpp:20005
↓ 1 callersFunctionclean_purge_graph
Purge_Dups.cpp:3884
↓ 1 callersFunctionclean_solve_general_ovlp
rcut.cpp:4579
↓ 1 callersFunctionclean_srt_integer
gfa_ut.cpp:7166
↓ 1 callersFunctionclean_ta_by_mc
rcut.cpp:3611
↓ 1 callersFunctionclean_trans_base_count_mmhap_comp_rmap
inter.cpp:22304
↓ 1 callersFunctionclean_trans_ovlp
hic.cpp:17555
↓ 1 callersFunctionclean_trio_untig_graph
Overlaps.cpp:19845
↓ 1 callersFunctionclean_ul_g
inter.cpp:20296
↓ 1 callersFunctionclean_visit_flag
Purge_Dups.cpp:577
↓ 1 callersFunctionclean_weak_ma_hit_t
Overlaps.cpp:11177
↓ 1 callersFunctionclear_Chain_Data
Hash_Table.cpp:1205
↓ 1 callersFunctionclear_Node_alloc
POA.cpp:196
↓ 1 callersFunctionclear_SNP_IDs
Correct.h:845
↓ 1 callersFunctionclear_path_dp_t
gfa_ut.cpp:3344
↓ 1 callersFunctionclear_ubuf_t
gfa_ut.cpp:3352
↓ 1 callersFunctionclip_integer_chimeric
gfa_ut.cpp:7015
↓ 1 callersFunctionclus_weight
rcut.cpp:2522
↓ 1 callersFunctioncluster_ul_advance
Correct.cpp:7167
↓ 1 callersFunctioncmp_shrink_ul_ov_t
inter.cpp:16316
↓ 1 callersFunctioncns_gen0
ecovlp.cpp:1159
↓ 1 callersFunctioncns_gen_full
ecovlp.cpp:1919
↓ 1 callersFunctioncollect_contain
Overlaps.cpp:2274
↓ 1 callersFunctioncollect_contain_trio
Overlaps.cpp:2144
↓ 1 callersFunctioncollect_hc_reverse_links
hic.cpp:5041
↓ 1 callersFunctioncollect_ma_utg_ts
v and w here have directions
Overlaps.cpp:30668
↓ 1 callersFunctioncollect_matches
only use non-repetitive minimizers
inter.cpp:549
↓ 1 callersFunctioncollect_nc_ovlps
inter.cpp:17818
↓ 1 callersFunctioncollect_no_cov_regions
Correct.cpp:10756
↓ 1 callersFunctioncollect_pp_ovlps
inter.cpp:18537
↓ 1 callersFunctioncollect_seed_hits
inter.cpp:582
↓ 1 callersFunctioncollect_sides
Overlaps.cpp:2221
↓ 1 callersFunctioncollect_sides_trio
Overlaps.cpp:2109
↓ 1 callersFunctioncollect_trans_purge_cov
Purge_Dups.cpp:4158
↓ 1 callersFunctioncollect_trans_purge_joint_cov
Purge_Dups.cpp:4205
↓ 1 callersFunctioncomp
rcut.cpp:3746
↓ 1 callersFunctioncompact_a
u[]: sc|occ of chains v[]: idx of each element
inter.cpp:757
↓ 1 callersFunctioncompress_mapped_pos_advance
hic.cpp:1135
↓ 1 callersFunctioncompress_mapped_pos_debug
hic.cpp:1385
↓ 1 callersFunctioncomput_sc_partial_cigar
inter.cpp:6703
↓ 1 callersFunctionconnective_conform
gfa_ut.cpp:4691
↓ 1 callersFunctionconvert_usg_t
gfa_ut.cpp:14963
↓ 1 callersFunctioncorrect_ul_overlap
Correct.cpp:11057
↓ 1 callersFunctioncount_k_hits_adv
Correct.cpp:15118
↓ 1 callersFunctioncount_k_hits_filter
Correct.cpp:15086
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