Code
Hub
Workspaces
Following
Trending
Connect
MCP
copy
Create free account
hub
/
github.com/chhylp123/hifiasm
/ functions
Functions
3,192 in github.com/chhylp123/hifiasm
⨍
Functions
3,192
◇
Types & classes
18
↓ 2 callers
Function
recal_boundary_exz
cannot use tstr in-place
Correct.cpp:2429
↓ 2 callers
Function
recal_boundary_non_retrieve_exz
cannot use tstr in-place
Correct.cpp:2471
↓ 2 callers
Function
recalu_minimizer0
anchor.cpp:2332
↓ 2 callers
Function
recover_chain_nodes
Overlaps.cpp:20653
↓ 2 callers
Function
recover_fake_read
Overlaps.cpp:9274
↓ 2 callers
Function
reduce_ma_utg_t
Overlaps.cpp:9346
↓ 2 callers
Function
reduce_ma_utg_t_scaf
Overlaps.cpp:9564
↓ 2 callers
Function
remove_and_check_bi_direction_edge_from_edge
POA.cpp:134
↓ 2 callers
Function
remove_trans_ovlp_connect
inter.cpp:10284
↓ 2 callers
Function
renew_g
Overlaps.cpp:39271
↓ 2 callers
Function
renew_paf0
gfa_ut.cpp:17079
↓ 2 callers
Function
renew_scaffold_utg
horder.cpp:4385
↓ 2 callers
Function
renew_u2g_cov
gfa_ut.cpp:16560
↓ 2 callers
Function
renew_ul_vec_t
gfa_ut.cpp:7700
↓ 2 callers
Function
renew_usg_t_bub
gfa_ut.cpp:13928
↓ 2 callers
Function
rescue_contain_ul_chains
inter.cpp:2856
↓ 2 callers
Function
reset_mb_g_t_z
rcut.cpp:2940
↓ 2 callers
Function
reset_utg_trans_hit_idx
tovlp.cpp:328
↓ 2 callers
Function
resize_window_list_alloc
Hash_Table.cpp:1362
↓ 2 callers
Function
resolve_bubble_chain_tangle
hic.cpp:8562
↓ 2 callers
Function
retrieve_cigar_err
Correct.cpp:18050
↓ 2 callers
Function
retrieve_cigar_err_dir
inter.cpp:10852
↓ 2 callers
Function
retrive_str_piece
inter.cpp:7318
↓ 2 callers
Function
round_test
hic.cpp:16817
↓ 2 callers
Function
rphase_hc
Correct.cpp:20191
↓ 2 callers
Function
rphase_rr
Correct.cpp:19457
↓ 2 callers
Function
scaf_hit2arc
Overlaps.cpp:21876
↓ 2 callers
Function
scaffold_ug
horder.cpp:3871
↓ 2 callers
Function
scan_cigar_interval
[scanXbeg, scanXend]
Correct.cpp:1710
↓ 2 callers
Function
scan_single_wcigar_toff_backward
Correct.cpp:23599
↓ 2 callers
Function
scf_g
horder.cpp:4401
↓ 2 callers
Function
select_bmer_distance
hic.cpp:6146
↓ 2 callers
Function
select_max_gchain
inter.cpp:6310
↓ 2 callers
Function
set_bub_idx
just change the hap status of beg/sink, but they are are still at a chain of bubble might be ok
hic.cpp:7220
↓ 2 callers
Function
set_cgid
Correct.cpp:19760
↓ 2 callers
Function
set_dv
hic.cpp:6060
↓ 2 callers
Function
set_fsk
Overlaps.cpp:22648
↓ 2 callers
Function
set_r_het_flag
Overlaps.cpp:14016
↓ 2 callers
Function
set_reverse_links
hic.cpp:5018
↓ 2 callers
Function
set_tag_pre_read
hic.cpp:16620
↓ 2 callers
Function
set_trio_flag_by_cov
Overlaps.cpp:16782
↓ 2 callers
Function
set_utg_by_dis
hic.cpp:3694
↓ 2 callers
Function
shift_block_phase_type
hic.cpp:11888
↓ 2 callers
Function
sl_ec_r
ecovlp.cpp:6402
↓ 2 callers
Function
split_sub_list
Correct.cpp:7357
↓ 2 callers
Function
srt_kv_emask_t
inter.cpp:12239
↓ 2 callers
Function
sub_ciagar_gen
Correct.cpp:14638
↓ 2 callers
Function
suffix_gorder_check
gfa_ut.cpp:5926
↓ 2 callers
Function
tes_path_connec
inter.cpp:19077
↓ 2 callers
Function
test_arc_rm
Overlaps.cpp:15104
↓ 2 callers
Function
test_yak_binning
Trio.cpp:352
↓ 2 callers
Function
topo_srt_gen
gfa_ut.cpp:5678
↓ 2 callers
Function
trace_phase_path
hic.cpp:6331
↓ 2 callers
Function
trans_check
gfa_ut.cpp:1948
↓ 2 callers
Function
trans_ovlp_connect1
Overlaps.cpp:14768
↓ 2 callers
Function
transfor_icoord
inter.cpp:1360
↓ 2 callers
Function
u2g_hybrid_aln
gfa_ut.cpp:13754
↓ 2 callers
Function
uc_block_qse_cutoff
gfa_ut.cpp:5220
↓ 2 callers
Function
ug_ext_0
gfa_ut.cpp:14301
↓ 2 callers
Function
ug_occ_hap_w
hic.cpp:17725
↓ 2 callers
Function
uidx_l_build
inter.cpp:515
↓ 2 callers
Function
ul_dp
gfa_ut.cpp:3774
↓ 2 callers
Function
ul_homo_path_check
gfa_ut.cpp:10247
↓ 2 callers
Function
ul_lalign
Correct.cpp:22427
↓ 2 callers
Function
ul_local_aln
Correct.cpp:24826
↓ 2 callers
Function
ul_map_lchain
anchor.cpp:2287
↓ 2 callers
Function
ul_rid_lalign_adv
Correct.cpp:25083
↓ 2 callers
Function
update_bub_sort_vec
hic.cpp:12647
↓ 2 callers
Function
update_bubble_weight
hic.cpp:14433
↓ 2 callers
Function
update_containment_distance
hic.cpp:4487
↓ 2 callers
Function
update_ctg_trans_cc
Overlaps.cpp:21799
↓ 2 callers
Function
update_des_str
Correct.cpp:2504
↓ 2 callers
Function
update_dump_trio
Overlaps.cpp:14612
↓ 2 callers
Function
update_exact_overlaps
Assembly.cpp:1375
↓ 2 callers
Function
update_exist_chain
inter.cpp:14722
↓ 2 callers
Function
update_hap_label
Overlaps.cpp:20836
↓ 2 callers
Function
update_l_coord
gfa_ut.cpp:3406
↓ 2 callers
Function
update_ol_track
(char *qstr, kvec_t_u64_warp* q_idx) -> only used for hpc
Correct.cpp:12384
↓ 2 callers
Function
update_paf
gfa_ut.cpp:17164
↓ 2 callers
Function
update_trace_idx
Correct.cpp:23369
↓ 2 callers
Function
update_ug_by_layout
horder.cpp:3645
↓ 2 callers
Function
update_ug_by_trans
hic.cpp:4024
↓ 2 callers
Function
update_ug_ou
Overlaps.cpp:8694
↓ 2 callers
Function
update_uovlp_chain_qse
inter.cpp:4792
↓ 2 callers
Function
update_usg_t_threading_0
gfa_ut.cpp:12371
↓ 2 callers
Function
usg_arc_mm_consist
gfa_ut.cpp:11479
↓ 2 callers
Function
usg_bridge_topocut_aux
gfa_ut.cpp:9055
↓ 2 callers
Function
usg_bub_identify
gfa_ut.cpp:15647
↓ 2 callers
Function
usg_end
gfa_ut.cpp:10668
↓ 2 callers
Function
usg_seq_del
gfa_ut.cpp:10569
↓ 2 callers
Function
usg_topocut_aux_unambi1
gfa_ut.cpp:17832
↓ 2 callers
Function
utg_cover_read_occ_by_qs
gfa_ut.cpp:4890
↓ 2 callers
Function
verbose_het_stat
hic.cpp:16146
↓ 2 callers
Function
wcns_gen
ecovlp.cpp:2293
↓ 2 callers
Function
write_All_reads
Process_Read.cpp:69
↓ 2 callers
Function
write_compress_base_disk
Process_Read.cpp:2166
↓ 2 callers
Function
write_debug_ma_hit_ts
Overlaps.cpp:23472
↓ 2 callers
Function
write_ma_hit_ts
Overlaps.cpp:23442
↓ 2 callers
Function
write_pt_index
htab.cpp:1367
↓ 2 callers
Function
write_yak_binning
Overlaps.cpp:23501
← previous
next →
1,201–1,300 of 3,192, ranked by callers