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github.com/chanzuckerberg/czid-web @v0.62.0_staging_2020-06-08
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README
IDseq · 
Infectious Disease Sequencing Platform
IDseq is a hypothesis-free global software platform that helps scientists identify pathogens in metagenomic sequencing data.
- Discover - Identify the pathogen landscape
- Detect - Monitor and review potential outbreaks
- Decipher - Find potential infecting organisms in large datasets
A collaborative open project of Chan Zuckerberg Initiative and Chan Zuckerberg Biohub.
Check out our repositories: - idseq-web - Frontend portal (here) - idseq-dag - Bioinformatics pipeline and workflow engine - idseq-cli - Command line upload interface - idseq-bench - Pipeline benchmarking tools
Check out our wiki for getting started with development in this repository and in IDseq in general.
Core symbols most depended-on inside this repo
↓ 70 filesTaxonLineage
app/models/taxon_lineage.rb
↓ 67 filesgetapp/assets/src/api/core.js
↓ 60 fileslogAnalyticsEventapp/assets/src/api/analytics.js
↓ 50 filesSampleapp/models/sample.rb
↓ 43 filesSamplesControllerapp/controllers/samples_controller.rb
↓ 37 fileswithAnalyticsapp/assets/src/api/analytics.js
Shape
Languages
Ruby51%
TypeScript49%
Python1%
Modules by API surface
app/models/pipeline_run.rb121 symbols
app/assets/src/components/Samples.jsx79 symbols
app/assets/src/components/visualizations/heatmap/Heatmap.js69 symbols
app/models/sample.rb61 symbols
app/controllers/samples_controller.rb59 symbols
app/assets/src/api/index.js49 symbols
app/helpers/samples_helper.rb44 symbols
app/lib/report_helper.rb41 symbols
app/models/pipeline_run_stage.rb33 symbols
app/models/bulk_download.rb33 symbols
app/assets/src/components/views/compare/SamplesHeatmapView/SamplesHeatmapView.jsx33 symbols
app/controllers/projects_controller.rb31 symbols
Datastores touched
(mysql)Database · 1 repos
For agents
$ claude mcp add czid-web \
-- python -m otcore.mcp_server <graph>