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github.com/bluenote-1577/myloasm @v0.6.0
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722 symbols
2,880 edges
43 files
92 documented · 13%
What it actually does AI analysis from the code graph — generated when you open this
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README
myloasm - a new metagenome assembler for (noisy) long reads
[!IMPORTANT] Documentation is hosted at https://myloasm-docs.github.io/.
Installation, usage, and more are in the documentation.
Myloasm is a de novo metagenome assembler for long-read sequencing data. It takes sequencing reads and outputs polished contigs in a single command.
See the documentation for more information.
Citation
Jim Shaw, Maximillian Marin, and Heng Li. High-resolution metagenome assembly for modern long reads with myloasm. Nature Biotechnology (2026).
Extension points exported contracts — how you extend this code
GraphEdge (Interface)Common edge trait - both ReadOverlapEdgeTwin and UnitigEdge share these [3 implementers]
src/graph.rs
RemovedEdgeSet (Interface)
Abstracts over sequential (`RefCell`) and concurrent (`RwLock`) removed-edge sets so that `safely_cut_edge` and its help [2 …
src/unitig.rs
GraphNode (Interface)
Common node trait - both ReadData and UnitigNode share these properties [2 implementers]
src/graph.rs
NodeSequence (Interface)
(no doc) [1 implementers]
src/unitig.rs
Core symbols most depended-on inside this repo
lencalled by 604
src/types.rs
iter
called by 464
src/types.rs
add_node
called by 187
src/unitig.rs
add_edge
called by 183
src/unitig.rs
get
called by 92
src/types.rs
build
called by 44
src/unitig.rs
to_string
called by 44
src/cli.rs
node_edge_direction
called by 42
src/graph.rs
Shape
Languages
Rust100%
Modules by API surface
src/types.rs143 symbols
src/unitig.rs121 symbols
src/twin_graph.rs79 symbols
src/map_processing.rs51 symbols
src/polishing/consensus2.rs44 symbols
src/mapping.rs35 symbols
src/skani/src/types.rs30 symbols
src/unitig_utils.rs23 symbols
src/graph.rs21 symbols
src/polishing/consensus.rs19 symbols
src/main.rs15 symbols
src/kmc_reader/kmc.rs15 symbols
For agents
$ claude mcp add myloasm \
-- python -m otcore.mcp_server <graph>