Parses Biosapiens OBO file and logs name/description at INFO level @param args
(String[] args)
| 47 | * @param args |
| 48 | */ |
| 49 | public static void main(String[] args) { |
| 50 | |
| 51 | OboParser parser = new OboParser(); |
| 52 | try (InputStream inStream = OboParser.class.getResourceAsStream("/ontology/biosapiens.obo"); |
| 53 | BufferedReader oboFile = new BufferedReader(new InputStreamReader(inStream))) { |
| 54 | Ontology ontology = parser.parseOBO(oboFile, "BioSapiens", "the BioSapiens ontology"); |
| 55 | Set<Term> keys = ontology.getTerms(); |
| 56 | Iterator<Term> iter = keys.iterator(); |
| 57 | while (iter.hasNext()) { |
| 58 | Term t = iter.next(); |
| 59 | logger.info("{} [{}]", t.getName(), t.getDescription()); |
| 60 | } |
| 61 | |
| 62 | } catch (Exception e) { |
| 63 | logger.error("Exception: " + e); |
| 64 | System.exit(1); |
| 65 | } |
| 66 | } |
| 67 | } |