Function get_Q

documentation/sphinx/examples/codon_model.py:578–612 · view source on GitHub ↗

Notation is from Yang and Nielsen 2008. The first group of args consists of precomputed ndarrays. The second group is only the fixation function. The third group consists of empirically (non-free) estimated parameters. The fourth group depends only on free parameters. Speed

(
        ts, tv, syn, nonsyn, compo, asym_compo,
        h,
        log_counts,
        log_mu, log_kappa, log_omega, log_nt_weights)

Source from the content-addressed store, hash-verified

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Callers 2

eval_fFunction · 0.85

mainFunction · 0.85

Calls 6

get_selection_FFunction · 0.85

get_selection_SFunction · 0.85

expMethod · 0.45

dotMethod · 0.45

diagMethod · 0.45

sumMethod · 0.45

Tested by

no test coverage detected