Remove a file or directory. If `recursive` is true, removes directories and their contents.

Look up the index for a hash, returning an error if not found. This is a convenience method that wraps [`lookup`](Self::lookup) and converts `None` t

Resolve a source path that may be a `$variable` reference. If it starts with `$`, extract vault paths from the bound nodes (using the node label or m

Retrieve the alive graph for a file starting from a position. This function traverses the graph from the given starting position, collecting all aliv

Execute the record command. # Process 1. Find and open the repository 2. Get the commit message (from argument, editor, or prompt) 3. Detect changes

Save remote configuration for this repository. # Arguments `config` - The remote configuration to save # Errors Returns an error if the config fil

Set the CRDT operations for this file.

Set the transcript path if not already set.

Sign a message.

Get statistics about the store.

Set the suggestion type.

Create a summary string for display. # Example ```rust use atomic_core::output::repo::OutputOutcome; let mut outcome = OutputOutcome::new(); outcom

Serialize to a compact text summary for LLM compaction context. The summary is structured but concise, optimized for token budget: - Lists goals (one

Tokenize file content into FileOps for display purposes. This is the **on-the-fly fallback** — when `diff`/`log`/`blame` needs semantic data but the

Set the tool used.

Truncate a string for display.

Filter by usage.

Validate the view name.

Stop a vault goal. With `promote: true`: marks the goal as "completed". With `discard: true`: deletes the goal entirely. Default (neither flag): mark

Scan the vault working copy for changed files. Walks `.vault/` and compares each markdown file against its stored entry in redb. Returns a list of pa

Builder: set the AI model.

Builder: set the diff algorithm.

Builder: set the `--all` flag.

Builder: set the --all flag.

Builder: set the author.

Builder: set files to record.

Builder: set the identifier.

Sets whether to merge consecutive whitespace tokens. When enabled, multiple spaces or tabs are combined into a single whitespace token.

Builder: set the path filter.

Set the prefix filter. # Arguments `prefix` - Path prefix to filter files

Set the tagged flag. Tagged changes represent named snapshots in the history. # Arguments `tagged` - Whether this change is tagged # Example ```r

Write the optional PROVENANCE section. Contains AI provenance metadata for the change. This section is optional — omit it if there's no AI provenance

Write a recorded change to the repository. This method inserts a change that was just recorded, updating both the graph and the tree tables. It's the

Add a successfully collected file.

Add a conflict to the result. # Arguments `conflict` - The conflict to add

Add a deleted file to the result.

Add a down-context position (successor). Down-context vertices are the successors where new content will be inserted before.

Add a hunk (graph operation) to this change.

Updates statistics with a tokenized line.

Add a missing context conflict.

Add an unchanged file to the result.

Appends content to the buffer and returns the byte range.

Append a human gate node (permission requested). Returns the new node's ID.

Get the separator as a byte slice.

Attach unhashed turn data to a change. Serializes `UnhashedTurnData` as JSON and stores it under the `"agent_turn"` key in `change.unhashed`. Creates

Add multiple authors.

Build the delegation scope.

Build a Go-like source file with `count` distinct top-level functions, each with a unique, greppable marker line. Mirrors the shape of the real-world

Build a graph where the vertex at `parent_idx` has the given child vertex indices. Vertices are pushed in order 0..N where 0 is DUMMY.

Collect all change `NodeId`s visible from a view and expand their indexed dependency closure without loading `.change` files. This is the dependency-

Returns the number of registered agents.

Create a directory and all parent directories.

Create a multi-progress container for parallel progress bars. A [`MultiProgress`] allows displaying multiple progress bars simultaneously, useful for

Create a test change with some content.

Skip TLS certificate verification (dangerous!). Only use this for testing or when connecting to servers with self-signed certificates that you trust.

Remove learnings that already exist in the context file. Returns a new `Learnings` with only the Repo and Workflow entries that are not already prese

Set an optional description.

Detect the encoding of content. Analyzes content to determine if it's valid UTF-8 text or binary data. # Arguments `content` - The content to analy

Ensure the workspace directory for a view exists. Creates `.atomic/workspaces/<view_name>/` and any intermediate directories. This is called from `i

Get the file extension for this format.

Extract edges from content text (wiki-links, file paths).

Extract unhashed turn data from a change. Returns `None` if the change has no unhashed data or no `"agent_turn"` key.

Get metadata for a file or directory.

Filter to a specific path prefix.

Recompute the contents hash after modifying contents.

Find the vault path for an intent by its display ID. First checks the manifest's `vault_path` field (fast path), then falls back to scanning vault en

Find the repository root starting from a specific path. Like [`find_repository_root`], but starts from the given path instead of the current working

Indices of unclassified tool-derived nodes grouped into sequences separated by structural boundaries (goals, patches, human gates, errors).

Find lines that appear exactly once in both sequences and match. Returns a list of matches sorted by position in the old sequence.

Finish a progress bar with an error message. This clears the progress bar and displays an error message in red. # Arguments `pb` - The progress bar