Convert this atom to use `Option<H>` for the change references. This is useful when building a change that references itself (using None for self-ref

Get the token changes for this line change.

Returns the trunk ID this operation affects, if any. Returns `None` for `Create` since the ID is assigned later.

Builder: set view filter.

Walk the directory tree recursively. Yields all files (not directories) under the given path, respecting ignore patterns. The `.atomic` directory is

Sets the common ancestor vertex via builder pattern.

Attach a header to this entry.

Builder: set the number of context lines.

Mark that this change has an unhashed section. Automatically sets the `HAS_UNHASHED` flag.

Write a conflict marker line. The format is: `MARKER ID [HASH]` followed by a newline.

Add a conflict to the result.

Add files to the accumulated files_touched list (deduplicating).

Adds a trunk operation.

Add an up-context position (predecessor). Up-context vertices are the predecessors where new content will be inserted after.

Appends content and returns the byte range.

Apply this alignment to a string within a given width. # Arguments `text` - The text to align `width` - The total width to fill # Returns A string

Returns the canonical string representation of this hook type.

Returns the token content as a string (lossy UTF-8 conversion).

Build the provenance. # Panics Panics if vendor or model is not set.

Build a [`StorageClient`] and return the resolved org slug alongside it. Useful for commands that also need to resolve org-scoped state (e.g. per-org

Build history options from command settings. Converts the command's settings into `HistoryOptions` for querying the repository. # Returns `HistoryO

Collect all files in a directory for tracking. This walks the directory tree and returns paths relative to the given root. Files matching `.atomicign

Compress all chunks in parallel using rayon and zstd. Each chunk is compressed independently on a rayon worker thread. This utilizes all available CP

Get the content bytes regardless of outcome type. For conflicts, returns the left side (caller should check [`is_conflict`](Self::is_conflict) first)

Creates a file creation operation. # Arguments `trunk_id` - The trunk ID for the new file `path` - The file path `encoding` - Optional text encoding

Extract entities from a source file. Automatically selects the right parser based on the file extension. Returns an empty list if the language is not

Format a timestamp for display. Converts a UTC timestamp to local time and formats it in a human-readable format. # Arguments `timestamp` - The UTC

Format a timestamp in a relative format (e.g., "2 hours ago"). This provides a more conversational representation of time that's easier to understand

Set whether to include deleted vertices. When true, vertices marked as deleted will be included in the graph. This is useful for showing conflict con

Insert a change, computing its hash automatically. # Arguments `change` - The change to store # Returns The computed hash. # Errors Returns an e

Merge the manifest's hooks into its target settings file. Existing entries whose command contains the manifest's `command_prefix` are removed first,

Check if this replacement has any effect.

Get the number of changes in the store.

Create a change with the given content bytes and return its hash.

Build a `SerializedGraphEdge` with the given flags and arbitrary but deterministic dest / introduced_by values.

Set the maximum number of vertices to process. # Arguments `max` - Maximum span count # Example ```rust use atomic_core::output::repo::FileOutputO

Helper: build a `MockGraph` with one vertex that has every valid edge kind.

Get the text content of a node.

Get a reference to the guarded path.

Peek at the next section's type without consuming it. Reads the section header from the source and stashes it internally. The next call to [`next_sec

Set the prefix filter. # Arguments `prefix` - Path prefix to filter # Example ```rust use atomic_core::output::repo::TreeCollectOptions; let opts

Set the prefix filter.

Get the public key as a base32 string.

Record a skipped file. # Arguments `path` - The path of the file that was skipped # Example ```rust use atomic_core::output::repo::OutputOutcome;

Execute the status command. This method: 1. Finds and opens the repository 2. Computes the working copy status 3. Displays the status in the requeste

Serialize the attestation to bytes. Format: `[MAGIC: 4 bytes][postcard payload]` The hash is computed over the entire serialized output.

Set the columns with full configuration. Use this when you need to customize alignment or width constraints. # Arguments `columns` - The column con

Set the current view (internal, does not update working copy). Update the view pointer on disk without materializing. This updates both the in-memor

Set the first prompt if not already set. Truncates to MAX_PROMPT_LENGTH. Also updates `current_prompt` on every call so the change message reflects th

Set the position.

Format a success message in green. Use this for positive outcomes, confirmations, and success states. # Arguments `text` - The text to format # Re

Get a suggestion for how to resolve this error. Returns a human-readable suggestion that can help users understand what action to take to resolve the

Serialize this payload to postcard bytes. This is a convenience wrapper around [`postcard::to_allocvec`]. The caller typically compresses the result

Tokenize text for the FTS inverted index. Extracts lowercase alphanumeric words of length >= 3, filtering out stop words (common English + programmin

Deflate changed vault files from disk into redb. Scans the vault working copy, detects changes, and updates the database. Returns the list of paths t