Method init_vault

atomic-repository/src/repository/vault.rs:43–91

Initialize the vault in this repository. Creates the vault tables in the pristine database and the `.vault/` directory structure on disk. This is idempotent — calling it on an already-initialized vault is a no-op. # Directory structure created: ```text .vault/ ├── goals/ ├── memory/ ├── skills/ ├── intents/ └── scratch/ ```

(&self)

    /// └── scratch/
    /// ```
    pub fn init_vault(&self) -> Result<(), RepositoryError> {
        // Initialize vault tables in redb
        {
            let mut txn = self
                .pristine
                .write_txn()
                .map_err(|e| RepositoryError::Database(e.to_string()))?;
            use atomic_core::pristine::VaultMutTxnT;
            txn.init_vault()
                .map_err(|e| RepositoryError::Database(e.to_string()))?;
            txn.commit()
                .map_err(|e| RepositoryError::Database(e.to_string()))?;
        }

        // Create directory structure on disk
        let vault_dir = self.vault_dir();
        let subdirs = ["goals", "memory", "skills", "intents", "scratch", "prompts"];
        for subdir in &subdirs {
            std::fs::create_dir_all(vault_dir.join(subdir))?;
        }

        // Initialize knowledge graph tables
        {
            let mut txn = self
                .pristine
                .write_txn()
                .map_err(|e| RepositoryError::Database(e.to_string()))?;
            use atomic_core::pristine::KgMutTxnT;
            txn.init_kg()
                .map_err(|e| RepositoryError::Database(e.to_string()))?;
            txn.commit()
                .map_err(|e| RepositoryError::Database(e.to_string()))?;
        }

        // Initialize embeddings table
        self.init_embeddings()?;

        // Install default vault content (skills, memory index, system prompt)
        self.vault_install_defaults()?;

        // NOTE: The vault files are NOT added+recorded here. The CLI init
        // command handles that in the correct sequence:
        //   1. Create .atomicignore → add → record
        //   2. Create .vault/ defaults → add → record
        // This avoids the TREE/status deadlock where add() marks files as
        // tracked but status() doesn't see them without graph positions.

        Ok(())
    }

    /// Bootstrap vault tables from an existing `.vault/` working copy.
    ///