Set the email address.

Builder: set format.

Produce the multi-line outdated message for a given source. Pure so the unit tests can match on substrings.

Simple hash-based "embedding" for testing purposes. Produces a deterministic vector from text content using character frequency analysis. NOT suitabl

Check if this is a file. # Returns `true` if this item represents a file.

Check if a node has a `pub` visibility modifier.

Check if the push was successful (no failures).

Check if a path is tracked. # Arguments `txn` - A transaction (read or write) `path` - The normalized path string

Iterate over all change hashes stored in the repository. This scans the changes directory and yields the hash of each change file found. The iteratio

The machine-consumable JSON token.

Get the number of collected files.

Load remote configuration for this repository. # Returns The remote configuration, which may be empty if no remotes are configured. # Errors Retur

Helper to create a test inode.

Helper to create a test span.

Get the commit message if a header is loaded.

Get a reference to the guarded path.

Execute the init command. This method: 1. Resolves and validates the target path 2. Validates the view name 3. Creates the directory if it doesn't ex

Save a change to the repository. The change is serialized and written to the `.atomic/changes/` directory using a content-addressed two-level directo

Save learnings to the agent's context file. If the file doesn't exist, creates it with the learnings section. If the file exists but has no learnings

Sign a message

Convert a [`ProvenanceGraph`] into a [`TraceRecord`] suitable for appending to `.agent-trace/traces.jsonl`. `root` is the repository root used for co

Serialize to the text wire format.

Iterate over untracked files.

Set a change filter for view-aware output.

Builder: set files to diff.

Builder: set the initial view name.

Open a file for writing, creating it if necessary.

Write this header to a writer. Writes exactly 64 bytes. # Errors Returns an I/O error if the write fails.

Add a single file to tracking. This is the low-level function that actually modifies the database. It does NOT check if the file exists on disk or is

Align the view pointer without materializing the working copy. This persists the new view name to `.atomic/current_view` so that subsequent `status()

Append a patch proposal node (change recorded). Returns the new node's ID.

Run `atomic <args>` inside `dir`.

Return a reference to the underlying change store.

Get a reference to the underlying database.

Pure decision core for identity resolution with a default fallback. Split from [`resolve_identity_with_default_fallback`] so the fallback logic can b

Compute the diff between two sequences of lines. This is the main entry point for diffing. It takes two slices of [`Line`]s and returns a [`DiffResul

Diff two snapshots to produce a `TurnChanges`.

Execute a query plan against a repository.

Finish a progress bar with a success message. This clears the progress bar and displays a success message in green. # Arguments `pb` - The progress

Get file content as it was BEFORE a specific change was applied. This method retrieves the content of a file at the state immediately prior to a chan

Get the inode for a tracked path. # Arguments `txn` - A transaction (read or write) `path` - The normalized path string

Returns `true` if no layers are selected.

Returns this trunk's branches in **file order** — top-of-file first. Iteration over `TRUNK_BRANCHES` alone returns branches in `(change_id, branch_id

Get the number of entries (files + directories).

Lift an authored memory (frontmatter + body) into a canonical node, attest it (hash + sign) with the given identity, and return the node. Mirrors [`li

Normalize a bare id, a `memory/<id>` path, an `<id>.md` name, or a full `memory/<id>.md` path all to the canonical vault path `memory/<id>.md`. This

Output the content of an alive graph to a span buffer. This function traverses the graph in SCC order (as computed by [`compute_order`](crate::output

Read the contents of a file into a buffer. The buffer is **appended to**, not cleared.

Record a directory creation. Duplicate directory paths are automatically deduplicated. # Arguments `path` - The path of the directory that was crea

Create a repo+vault and N intents; return (repo, sorted ids, tempdir).

Initialize a repo with a single recorded file `file.txt` = "v1\n".

Set the columns with full configuration. Use this when you need to customize alignment or width constraints. # Arguments `columns` - The column con

Sets the content range.

Get a suggestion for how to resolve this error. Returns a human-readable suggestion that can help users understand what action to take to resolve the

Walk the directory tree and build a snapshot of all files. Skips directories matching any of the ignore patterns. Only includes regular files (not di

Attempt to merge a conflict group using token-level semantics. # Algorithm 1. Extract the two competing vertices (only 2-way supported). 2. Retrieve

Delete a vault entry by path. Also updates the manifest.

Verify an attested node's content hash and signature against a public key.

Check if a view exists. # Arguments `name` - The name of the view to check