Builder: set the AI-assisted flag.

Builder: set the AI provider.

Builder: set the diff algorithm.

Builder method to set column

Builder method to set exported flag

Set the new line number.

Mark that this change has a provenance section. Automatically sets the `HAS_PROVENANCE` flag.

Write the optional UNHASHED section. This section is NOT included in the content hash. It's intended for data that shouldn't affect the change's iden

Add a detected change.

Add a change hash that this graph explains.

Add a file item.

Adds a new file with content, automatically tokenizing into lines.

Add files to the accumulated files_touched list (deduplicating).

Add a built graph_op to the result.

Add a zombie span (simplified API).

Append raw bytes to the contents buffer. Returns the starting position of the appended content, which can be used to reference this content in hunks.

Calculate which changes need to be pulled from the remote. Compares remote and local changelists to determine which remote changes are missing locall

Get the number of children for a span. This includes both regular and extra children.

Collect files from the working copy. Scans the working copy to find all files present on disk. This is the complement to `collect_tracked_files` for

Convert a `Position<Option<Hash>>` to a [`CompactPosition`]. # Errors Returns [`FormatError::HashNotFound`](super::super::error::FormatError::HashNo

Get the content bytes regardless of outcome type. For conflicts, returns the left side (caller should check [`is_conflict`](Self::is_conflict) first)

Convert a remote error to a CLI error. Maps the various remote error types to appropriate CLI error types with user-friendly messages and suggestions

Set the total cost in USD.

Decode trunk data from variable-length bytes. Returns `None` if the bytes are invalid or too short.

Get a human-readable description of this status.

Detect changes between the working copy and pristine state. This is the main entry point for change detection. It collects files from both the pristi

Derive a subject URI from a vault path and entry type.

Convert a [`CompactPosition`] to a `Position<Option<Hash>>`. # Errors Returns [`FormatError::HashIndexOutOfBounds`](super::super::error::FormatError

Resolve the span containing `target` (preferring a non-empty span over an empty marker), if this change is loaded.

Resolve the latest manifest hash for an external session ID.

Load ignore rules for this repository. This loads patterns from: - Global config: `~/.config/atomic/ignore` - Repository-local: `.atomicignore` in re

Insert a change into the current view. This is the high-level method for inserting a single change into the repository. It loads the change from the

Record merged content for the lead vertex of a resolved SCC.

Merge the manifest's hooks into its target settings file. Existing entries whose command contains the manifest's `command_prefix` are removed first,

Consume and convert to the serializable `change::ops::FileOps` type.

Check if this is the repository root.

List all stored sessions. Returns sessions sorted by `started_at` (newest first). Skips corrupted session files with a warning log.

List all identities in the store.

Load a keypair for an identity.

Create a test span

The `<id>` stem for a bare id or any accepted path form. Used both to build the human-facing messages and (sanitized) to KEY the attestation path.

Set the model identifier.

Create statistics for a modified file. # Arguments `path` - The file path `insertions` - Number of lines added `deletions` - Number of lines deleted

Generate the next unique node ID and increment the counter.

Get the text content of a node.

Normalize a user-supplied intent reference to its manifest key (the human key `PROJECT::author::seq`). Accepts, filling in the current project and au

Parse a combined `workspace/project` slug into its two components. # Errors Returns [`CliError::InvalidArgument`] if the input does not contain exac

Convert a Position<NodeId> to Position<Option<Hash>>, resolving external change hashes. Unlike `position_to_option_hash`, this function looks up the

Print a "next steps" section to guide users. This function formats a list of suggested commands that the user might want to run next. It's designed t

Provision an agent's private working tree as a copy-on-write clone of this repository's working tree. Copies every tracked-or-untracked working file

Push a node onto the graph, updating stats and last_node cursor.

Read a memory by id (or path) from the vault and return its lift inputs.

Retrieve the alive graph for a file starting from a position. This function traverses the graph from the given starting position, collecting all aliv

Execute the change command. This method: 1. Finds the repository root 2. Resolves the change identifier to a hash 3. Loads the change from the store

Save an identity to the store.

Serialize a ViewState to bytes Layout (v2): [id:8][name_len:4][name:var][merkle:32][change_count:8][kind:1][parent:8] The `kind` and `parent` fields

Set the content.

Set the header row from simple string values. This creates columns with default settings from header strings.

Set the transcript path if not already set.

Skip the next section without decompressing it. Reads the section header and compressed payload from the source but does not decompress. The compress

Convert this atom to use `Option<H>` for the change references. This is useful when building a change that references itself (using None for self-ref

Get the token changes for this line change.

Returns the trunk ID this operation affects, if any. Returns `None` for `Create` since the ID is assigned later.

Validate a canonical Memory node against `MemoryShape`. Mirrors the doc's shape: `memoryKind` and `status` are closed value sets (exactly one each), `