Decode trunk data from variable-length bytes. Returns `None` if the bytes are invalid or too short.

Delete a view from the repository. This removes the view and all its associated metadata, but does not delete the changes themselves. Changes remain

Get a human-readable description of this status.

Detect changes between the working copy and pristine state. This is the main entry point for change detection. It collects files from both the pristi

Derive a subject URI from a vault path and entry type.

Convert a [`CompactPosition`] to a `Position<Option<Hash>>`. # Errors Returns [`FormatError::HashIndexOutOfBounds`](super::super::error::FormatError

Resolve the span containing `target` (preferring a non-empty span over an empty marker), if this change is loaded.

Finish a progress bar with a success message. This clears the progress bar and displays a success message in green. # Arguments `pb` - The progress

Resolve the latest manifest hash for an external session ID.

Load ignore rules for this repository. This loads patterns from: - Global config: `~/.config/atomic/ignore` - Repository-local: `.atomicignore` in re

Record merged content for the lead vertex of a resolved SCC.

Merge the manifest's hooks into its target settings file. Existing entries whose command contains the manifest's `command_prefix` are removed first,

Consume and convert to the serializable `change::ops::FileOps` type.

Check if there are no remotes configured.

Check if this is the repository root.

List all stored sessions. Returns sessions sorted by `started_at` (newest first). Skips corrupted session files with a warning log.

List all identities in the store.

Load a keypair for an identity.

Create a test span

The `<id>` stem for a bare id or any accepted path form. Used both to build the human-facing messages and (sanitized) to KEY the attestation path.

Set the model identifier.

Create statistics for a modified file. # Arguments `path` - The file path `insertions` - Number of lines added `deletions` - Number of lines deleted

Generate the next unique node ID and increment the counter.

Get the text content of a node.

Normalize a user-supplied intent reference to its manifest key (the human key `PROJECT::author::seq`). Accepts, filling in the current project and au

Parse a combined `workspace/project` slug into its two components. # Errors Returns [`CliError::InvalidArgument`] if the input does not contain exac

Convert a Position<NodeId> to Position<Option<Hash>>, resolving external change hashes. Unlike `position_to_option_hash`, this function looks up the

Print a "next steps" section to guide users. This function formats a list of suggested commands that the user might want to run next. It's designed t

Provision an agent's private working tree as a copy-on-write clone of this repository's working tree. Copies every tracked-or-untracked working file

Push a node onto the graph, updating stats and last_node cursor.

Read an intent by ID from the vault and return its lift inputs. `vault_intent_show` normalizes the ID (`"PIMO-1"` / `"pimo-1"` / `"1"`) and resolves

Read a memory by id (or path) from the vault and return its lift inputs.

Retrieve the alive graph for a file starting from a position. This function traverses the graph from the given starting position, collecting all aliv

Execute the change command. This method: 1. Finds the repository root 2. Resolves the change identifier to a hash 3. Loads the change from the store

Save an identity to the store.

Serialize a ViewState to bytes Layout (v2): [id:8][name_len:4][name:var][merkle:32][change_count:8][kind:1][parent:8] The `kind` and `parent` fields

Set the content.

Set the header row from simple string values. This creates columns with default settings from header strings.

Set the transcript path if not already set.

Skip the next section without decompressing it. Reads the section header and compressed payload from the source but does not decompress. The compress

Convert this atom to use `Option<H>` for the change references. This is useful when building a change that references itself (using None for self-ref

Get the token changes for this line change.

Returns the trunk ID this operation affects, if any. Returns `None` for `Create` since the ID is assigned later.

Validate a canonical Memory node against `MemoryShape`. Mirrors the doc's shape: `memoryKind` and `status` are closed value sets (exactly one each), `

Scan the vault working copy for changed files. Walks `.vault/` and compares each markdown file against its stored entry in redb. Returns a list of pa

Walk the directory tree recursively. Yields all files (not directories) under the given path, respecting ignore patterns. The `.atomic` directory is

Sets the common ancestor vertex via builder pattern.

Attach a header to this entry.

Builder: set the number of context lines.

Mark that this change has an unhashed section. Automatically sets the `HAS_UNHASHED` flag.

Write a conflict marker line. The format is: `MARKER ID [HASH]` followed by a newline.

Add a conflict to the result.

Add a line to this graph_op.

Adds a trunk operation.

Add an up-context position (predecessor). Up-context vertices are the predecessors where new content will be inserted after.

Appends content and returns the byte range.

Apply this alignment to a string within a given width. # Arguments `text` - The text to align `width` - The total width to fill # Returns A string

Recursively apply the agent-native help layout to a command and every one of its (transitive) subcommands. clap does not propagate `help_template` to

Set whether to insert dependencies automatically.

Returns the canonical string representation of this hook type.

Returns the token content as a string (lossy UTF-8 conversion).

Join lines with '\n' and a trailing newline (the well-supported shape).

Generic attest over a JSON-LD value — the *one* canonicalization/signing path all typed nodes share. Fills `attributedTo` (from the identity's `did:at

The tracked-vault path for a memory's attestation: `attestations/memory/<sanitized-id>/attested.md`. NOTE the `attestations/memory/` sub-namespace: a