Resolve the current identity for vault operations. Resolution order: 1. Atomic identity store (default identity) 2. Git config (user.name + user.emai

Restore a single file according to its status. - `Added` (tracked but not recorded): undo tracking. The file stays on disk and becomes untracked, so

Retrieve content with options. Like `retrieve_content`, but allows configuration via options. # Arguments `txn` - Transaction providing graph acces

Save remote configuration to a config file. This preserves other sections in the config file and only updates the `[remotes]` section. # Arguments

Save the store configuration.

Get the session directory for provenance graph storage. Returns `{sessions_dir}/{session_id}/` — a subdirectory alongside the session's JSON file. Th

Set the default remote.

Set the encoding.

Set the inode.

Set the change kind.

Sets the trunk's path (for move operations).

Check if a path should be ignored during tracking, with optional ignore rules. This is the full version that accepts optional [`IgnoreRules`] for pat

Get the conversion statistics.

Return statistics about the table for debugging and logging. # Examples ```rust use atomic_core::change::format_v3::HashDedupTable; let mut table =

Returns a human-readable suggestion for how to fix this error. This is intended for CLI error reporting where a "did you mean?" style hint can guide

Make prior atomic renames/removals in `.atomic` durable before a coupled database transition is allowed to advance. Directory fsync is available on Un

Convert to file output options.

Format this entry as a protocol line.

Serialize to the full JSON-compatible representation.

Node id for a todo. Agent-provided IDs are only stable within their session, so qualify them with that session. Generated turn-local IDs are already f

Set the generic todo snapshot captured at turn end.

Get all tracked paths under a directory prefix. # Arguments `txn` - A transaction (read or write) `prefix` - The directory prefix to search under

Advance the state machine to at least the given state. This handles the forward transitions: if we're in WritingMetadata and asked to write a SEMANTI

Truncate a string for summary display, adding "..." if truncated.

Truncate a prompt to the given maximum length, adding "..." if needed.

Truncate a prompt string for display, preserving word boundaries where possible.

Node id for one turn row in a session ledger.

Limit changes to those up to and including a tag.

Update directory flags (default: delete + re-add).

Update the largest file size if this file is larger. # Arguments `size` - The file size in bytes

Identify the exact stored Vault revision, including entry type, frontmatter, and body rather than only the body content hash.

Link a goal to an intent.

Verify that chunks form a contiguous, non-overlapping cover of the data.

Verify working-copy consistency against the graph. Read-only. See the module docs for the two checks performed. Returns a [`VerifyReport`]; `report.i

Compute the set of file paths visible on a view. Visibility includes the view's own changes AND all changes inherited through the parent chain. A dr

Set the diff algorithm. # Arguments `algorithm` - Algorithm to use for content comparison # Example ```rust use atomic_core::record::DetectOptions

Set the diff algorithm. # Arguments `algorithm` - Algorithm to use for content comparison # Example ```rust use atomic_core::record::workflow::Wor

Set whether to use mtime optimization. # Arguments `check` - Whether to check mtime before comparing content

Mark as having conflicts.

Set cost in USD.

Builder: set the `--dry-run` flag.

Builder: set the force flag.

Builder: set the force flag.

Set input tokens.

Builder: set the insecure flag.

Builder: set the keep flag (legacy, now the default).

Builder: set the project kind for .atomicignore template.

Builder: set the local state.

Builder: set the message.

Set the change message. The message is typically the first line of the change description, used for display purposes. # Arguments `message` - The c

Builder: set the message.

Builder: set metadata.

Sets the modification detection threshold. Lines with similarity above this threshold are classified as "modified" rather than "deleted and inserted"

Builder: set the name-status flag.

Builder: set the target path.

Set the reasoning summary.

Builder: set the remote name or URL.

Builder: set reverse order.

Builder: set the reword flag.

Builder: set the skip-binary flag.

Set the tagged flag. Tagged changes represent named snapshots in the history. When a change is tagged, the pull operation will also download the asso

Builder: set the timeout in seconds.

Builder: set the timeout in seconds.

Set whether to include untracked files.

Compute word-level diff with custom configuration. # Arguments `old` - The original content `new` - The modified content `config` - Configuration op

Write a change to the graph and add it to a view's change log. This function handles two cases: 1. **New change**: The change hasn't been applied to

Mirror `attest`'s tracked-vault write (body = pretty JSON + '\n').

Updates statistics with a line change.

Add a change that connected to this span.

Add a change that deleted this span.

Add a dependency. # Arguments `hash` - The dependency hash

Create a draft view `feature` (parent = dev), switch to it, and record a change unique to that view.

Add an error message.

Add an extra child to a span. Extra children are stored directly on the span rather than in the shared array. This is useful when edges are discovere

Add a hook command to a matcher list, creating the matcher if needed.

Add a pending change, potentially combining with existing ones.

Add a spinner to a multi-progress container. # Arguments `mp` - The multi-progress container `message` - The spinner message