Convert a [`CompactGraphOp`] to a `GraphOp<Option<Hash>>`. This is the main entry point for expanding a compact graph operation after deserialization

Get a reference to the file operations.

Check if a node has a specific modifier (public, private, static, final, abstract, etc.).

Consume this writer and return the underlying writer.

Iterate over all change hashes stored on disk. This scans the changes directory and yields the hash of each change file found. The iteration order is

Lift an authored intent (frontmatter + body) into a canonical node, attest it (hash + sign) with the given identity, and return the node. The node is

List all tracked files in the repository. # Example ```rust,ignore for file in repo.list_tracked_files()? { println!("{}: inode {}", file.path.displ

Load the metadata for a change. This reads only from CHANGE_META — the cheapest possible read. Useful for `atomic log`, header inspection, dependency

Get the operations as a slice.

The org slug this client is scoped to.

Create the reverse edge modification. This creates an edge that undoes this modification: - Swaps `previous` and `flag` - Uses the given `introduced_

Create a record item for the repository root. This is a special item representing the root directory. # Example ```rust use atomic_core::record::Re

Set the number of SEMANTIC sections (one per modified file). Automatically sets the `HAS_SEMANTIC` flag if count > 0.

Set the agent identity for sessions created by this orchestrator. Called by the CLI hook handler after construction, before dispatching events. This

Show an intent's full content.

Set the detail field.

Builder: set files to restore.

Add a graph_op to this diff.

Add a graph_op to the recorded actions. # Arguments `graph_op` - The graph_op to add # Returns The index of the added graph_op (for associating in

Performs the analysis and returns the result. This is the main entry point for analyzing differences.

Build RecordOptions from command-line arguments.

Build AI provenance from CLI flags and environment variables. Environment variables take precedence over CLI flags for consistency with AI tool integ

Build the change message for a turn. Message priority: 1. If the prompt is meaningful (not a slash command, not too short), use it directly — the use

Compute the filesystem path for a change with the given hash. The path follows the two-level directory structure: `{changes_dir}/{prefix}/{full_hash}

Compute the new Merkle state after applying a change. The Merkle state is computed incrementally: `new_state = Hash(old_state || change_hash)` This

Compute the output order using Tarjan's SCC algorithm. This function: 1. Runs Tarjan's algorithm to find all SCCs 2. Builds the conflict tree 3. Iden

Format conflict content in bold red. Use this for conflict markers or conflicted file indicators.

Convert a SemanticDiff to FileOps. # Arguments `diff` - The semantic diff to convert `path` - The file path # Returns A `FileOps` containing all t

Converts a file addition with content to CRDT operations. This generates: - `TrunkOp::Create` for the file - `BranchOp::Insert` for each line - `Leaf

Get the number of changes unrecorded.

Get the number of entries yielded so far.

Create a named tag on the current view at the current sequence.

Create a simple test FileAdd graph_op

Set the email address.

Produce the multi-line outdated message for a given source. Pure so the unit tests can match on substrings.

Get the recorded content for a tracked file on a specific view. Like `get_file_content`, but reads from the specified view instead of the current vie

Simple hash-based "embedding" for testing purposes. Produces a deterministic vector from text content using character frequency analysis. NOT suitabl

Initialize the knowledge graph tables.

Check if this is a file. # Returns `true` if this item represents a file.

Check if this format is a single file.

Check if a node has a `pub` visibility modifier.

Check if the push was successful (no failures).

Check if a path is tracked. # Arguments `txn` - A transaction (read or write) `path` - The normalized path string

The machine-consumable JSON token.

Get the number of collected files.

Lift an intent from its frontmatter spine and markdown body.

Load remote configuration for this repository. # Returns The remote configuration, which may be empty if no remotes are configured. # Errors Retur

Helper to create a test inode.

Helper to create a test span.

Get a reference to the guarded path.

Print a blank line for visual separation.

Execute the init command. This method: 1. Resolves and validates the target path 2. Validates the view name 3. Creates the directory if it doesn't ex

Save a change to the repository. The change is serialized and written to the `.atomic/changes/` directory using a content-addressed two-level directo

Save learnings to the agent's context file. If the file doesn't exist, creates it with the learnings section. If the file exists but has no learnings

Sign a message

Convert a [`ProvenanceGraph`] into a [`TraceRecord`] suitable for appending to `.agent-trace/traces.jsonl`. `root` is the repository root used for co

Serialize to a compact binary blob via postcard.

Iterate over untracked files.

Extract and store KG data for a vault entry in one step.

Set a change filter for view-aware output.

Builder: set the initial view name.

Open a file for writing, creating it if necessary.

Write this header to a writer. Writes exactly 64 bytes. # Errors Returns an I/O error if the write fails.

Add a single file to tracking. This is the low-level function that actually modifies the database. It does NOT check if the file exists on disk or is

Append a patch proposal node (change recorded). Returns the new node's ID.

Run `atomic <args>` inside `dir`.

Collect all change `NodeId`s visible from a view, including parent views. For **draft** views this walks the full overlay chain (other draft ancestor